Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SL003B_RS07865 Genome accession   NC_015259
Coordinates   1672105..1673178 (+) Length   357 a.a.
NCBI ID   WP_041375434.1    Uniprot ID   -
Organism   Polymorphum gilvum SL003B-26A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1667105..1678178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SL003B_RS07845 (SL003B_1556) - 1667528..1668466 (-) 939 WP_013652301.1 DUF6384 family protein -
  SL003B_RS07850 (SL003B_1557) - 1668524..1669693 (-) 1170 WP_013652302.1 hypothetical protein -
  SL003B_RS07855 (SL003B_1558) - 1669909..1670808 (-) 900 WP_041375954.1 pseudouridine-5'-phosphate glycosidase -
  SL003B_RS07860 (SL003B_1559) - 1670912..1671832 (-) 921 WP_013652304.1 PfkB family carbohydrate kinase -
  SL003B_RS07865 (SL003B_1560) recA 1672105..1673178 (+) 1074 WP_041375434.1 recombinase RecA Machinery gene
  SL003B_RS07870 (SL003B_1561) alaS 1673503..1676166 (+) 2664 WP_013652306.1 alanine--tRNA ligase -
  SL003B_RS07875 (SL003B_1562) - 1676307..1677668 (+) 1362 WP_242390349.1 cyclic nucleotide-gated ion channel -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38168.72 Da        Isoelectric Point: 4.8500

>NTDB_id=40103 SL003B_RS07865 WP_041375434.1 1672105..1673178(+) (recA) [Polymorphum gilvum SL003B-26A1]
MSQSSLRLVESSQMDKTKALDAALSQIERAFGKGSIMRLGQGQAVEVQTVSTGSLGLDIALGVGGLPRGRIVEIYGPESS
GKTTLALHTIAEAQKLGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDAGEQALEIADTLVRSGAIEVLVIDSVAALT
PKAELEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS
IKDRDEVIGNQTRVKVVKNKLAPPFRQVEFDVIYGEGVSKMGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKQFLR
ENPEIAAEIELAIRQNAGLLSDAIIDPDGVDEAGLDD

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=40103 SL003B_RS07865 WP_041375434.1 1672105..1673178(+) (recA) [Polymorphum gilvum SL003B-26A1]
ATGTCGCAAAGTTCACTTCGCCTTGTAGAGAGCAGCCAGATGGACAAGACCAAGGCGCTGGATGCAGCGCTGTCGCAGAT
CGAACGGGCCTTCGGCAAGGGCTCCATCATGCGCCTGGGCCAGGGCCAGGCCGTCGAGGTCCAGACCGTCTCCACCGGCT
CTCTCGGGCTCGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGGCGCATCGTCGAGATCTACGGTCCGGAATCCTCG
GGCAAGACGACGCTCGCCCTGCACACCATCGCCGAGGCGCAGAAGCTCGGCGGCATCTGCGCCTTCATCGACGCAGAGCA
TGCGCTCGACCCGGTCTATGCCCGCAAGCTCGGCGTCAACATCGACGACCTGCTGATCTCCCAGCCGGACGCCGGCGAGC
AAGCTCTGGAGATCGCCGACACGCTGGTGCGCTCGGGCGCCATCGAGGTGCTGGTGATCGATTCCGTCGCGGCGCTGACG
CCCAAGGCCGAACTGGAAGGCGAGATGGGCGACAGCCTGCCGGGCATGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAA
GCTGACCGCCTCGATTTCCAAGTCTAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCG
GCTCGCCGGAAACCACGACCGGCGGCAACGCGCTCAAGTTCTACGCCTCTGTGCGCCTCGACATCCGCCGCATCGGCTCG
ATCAAGGACCGCGACGAGGTGATCGGCAACCAGACCCGGGTCAAGGTGGTCAAGAACAAGCTGGCCCCGCCGTTCCGTCA
GGTTGAGTTCGACGTCATCTACGGCGAGGGCGTTTCCAAGATGGGCGAGTTGGTCGACCTCGGCGTCAAGGCCGGCATCG
TCGAGAAGTCTGGCGCCTGGTTCTCCTACAACAGCCAGAGGCTCGGCCAGGGACGCGAGAACGCCAAGCAGTTCCTGCGC
GAGAACCCGGAGATCGCCGCCGAGATCGAGTTGGCAATCCGCCAGAACGCCGGCCTGCTGTCCGACGCGATCATCGATCC
GGACGGGGTCGACGAGGCCGGGCTCGACGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

74.76

87.675

0.655
  recA Acinetobacter baylyi ADP1

70.821

92.157

0.653
  recA Glaesserella parasuis strain SC1401

69.461

93.557

0.65
  recA Neisseria gonorrhoeae MS11

70.717

89.916

0.636
  recA Neisseria gonorrhoeae MS11

70.717

89.916

0.636
  recA Neisseria gonorrhoeae strain FA1090

70.717

89.916

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.093

89.916

0.63
  recA Vibrio cholerae strain A1552

70.093

89.916

0.63
  recA Acinetobacter baumannii D1279779

70.093

89.916

0.63
  recA Pseudomonas stutzeri DSM 10701

69.688

89.636

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.178

91.317

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

65.257

92.717

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

92.717

0.602
  recA Helicobacter pylori 26695

63.284

93.838

0.594
  recA Helicobacter pylori strain NCTC11637

62.985

93.838

0.591
  recA Streptococcus mitis NCTC 12261

57.778

100

0.583
  recA Streptococcus pneumoniae D39

59.078

97.199

0.574
  recA Streptococcus pneumoniae TIGR4

59.078

97.199

0.574
  recA Streptococcus pneumoniae R6

59.078

97.199

0.574
  recA Streptococcus pneumoniae Rx1

59.078

97.199

0.574
  recA Streptococcus mitis SK321

58.79

97.199

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

62.769

91.036

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.299

93.838

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.924

88.515

0.566
  recA Streptococcus mutans UA159

60.843

92.997

0.566
  recA Streptococcus pyogenes NZ131

60.366

91.877

0.555

Multiple sequence alignment