Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D3800_RS08930 Genome accession   NZ_CP046058
Coordinates   1848418..1849485 (-) Length   355 a.a.
NCBI ID   WP_002739007.1    Uniprot ID   L7E3P3
Organism   Microcystis aeruginosa NIES-298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843418..1854485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3800_RS08910 (D3800_08915) - 1843930..1845138 (-) 1209 WP_103112694.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  D3800_RS08915 (D3800_08920) - 1845233..1845706 (-) 474 WP_103112693.1 CRR6 family NdhI maturation factor -
  D3800_RS23950 - 1846110..1846235 (-) 126 WP_202861582.1 ABC transporter -
  D3800_RS08920 (D3800_08930) - 1846885..1847754 (+) 870 WP_103112692.1 bile acid:sodium symporter family protein -
  D3800_RS08925 (D3800_08935) - 1847798..1848394 (+) 597 WP_103112691.1 hypothetical protein -
  D3800_RS08930 (D3800_08940) recA 1848418..1849485 (-) 1068 WP_002739007.1 recombinase RecA Machinery gene
  D3800_RS08935 (D3800_08945) - 1849613..1850566 (-) 954 WP_103112690.1 aldo/keto reductase -
  D3800_RS23955 - 1850962..1851135 (-) 174 WP_002748305.1 hypothetical protein -
  D3800_RS08940 (D3800_08950) - 1851300..1852562 (+) 1263 WP_162205093.1 pentapeptide repeat-containing protein -
  D3800_RS08945 (D3800_08955) - 1853164..1853499 (-) 336 WP_002748301.1 XisI protein -
  D3800_RS08950 (D3800_08960) - 1853487..1853903 (-) 417 WP_002751648.1 XisH family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38221.63 Da        Isoelectric Point: 4.7005

>NTDB_id=400757 D3800_RS08930 WP_002739007.1 1848418..1849485(-) (recA) [Microcystis aeruginosa NIES-298]
MATMTNNSDRDKALGLVLNQIERNFGKGSIMRLGDATRMRVETVPSGALTLDMALGGGLPKGRIVEIYGPESSGKTTLAL
HAIAEVQKAGGVAAFVDAEHALDPTYSEDLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEG
EMGDNQVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEG
EYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENIAQGRDNAVKYLEERPEVA
AEIEKLLRDKLDMGSVPLPTEPADEDEEDDLEPEI

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=400757 D3800_RS08930 WP_002739007.1 1848418..1849485(-) (recA) [Microcystis aeruginosa NIES-298]
ATGGCGACAATGACAAATAATTCCGATCGAGATAAGGCCTTAGGTTTAGTCTTAAATCAAATCGAGCGCAACTTTGGCAA
AGGTTCGATTATGCGTTTAGGAGACGCCACCCGGATGCGGGTGGAAACCGTGCCTAGTGGTGCTTTAACCCTAGATATGG
CGTTGGGTGGCGGTTTACCGAAGGGCCGCATCGTCGAAATTTACGGGCCGGAAAGTTCTGGAAAAACCACCTTAGCCCTC
CATGCGATCGCAGAAGTGCAGAAAGCTGGGGGAGTGGCGGCCTTTGTCGATGCGGAACACGCTTTAGATCCCACCTATTC
GGAAGATTTAGGGGTAGATATCAATAATTTACTGGTGGCACAACCGGACACGGGGGAGGCTGCCTTAGAAATAGTTGACC
AGTTAGTGCGTTCTTCGGCCGTGGATATCGTTGTCATCGACTCGGTGGCCGCTTTAGTGCCACGGGCGGAAATTGAAGGG
GAAATGGGGGATAATCAGGTGGGTTTGCAGGCCCGTTTGATGAGTAAAGCCCTGCGAAAAATTGCCGGTAATATTGGTAA
ATCTGGTTGTGTGGTGATTTTCCTCAACCAACTGCGGCAAAAAATCGGTGTCACCTACGGCAATCCTGAAGTGACCACCG
GGGGAACGGCCTTAAAATTTTATGCCTCGGTGCGTTTAGATATCCGTCGCATTCAAACTTTGAAAAAAGGCACGGAAGGG
GAATACGGAATTCGGGCTAAAGTTAAGGTGGCTAAAAATAAAGTCGCGCCTCCTTTCCGGATTGCTGAATTTGATATTAT
CTTCGGTAAAGGCATTTCCCAAGTGGGTTGTATGCTCGATATCGCCGAACAAACTAACGTAGTTACTCGTAAAGGGGCAT
GGTATAGCTATAATGGCGAAAATATTGCCCAGGGTCGCGATAATGCCGTTAAATATCTCGAAGAAAGGCCAGAAGTAGCG
GCAGAAATTGAGAAGTTATTGCGGGATAAATTAGACATGGGTTCGGTTCCTTTACCCACGGAACCGGCCGATGAAGACGA
GGAGGACGATCTGGAACCAGAAATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L7E3P3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.714

98.592

0.608
  recA Acinetobacter baumannii D1279779

60.405

97.465

0.589
  recA Ralstonia pseudosolanacearum GMI1000

62.763

93.803

0.589
  recA Pseudomonas stutzeri DSM 10701

60.465

96.901

0.586
  recA Helicobacter pylori 26695

57.714

98.592

0.569
  recA Helicobacter pylori strain NCTC11637

57.714

98.592

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

57.925

97.746

0.566
  recA Neisseria gonorrhoeae MS11

57.143

98.592

0.563
  recA Neisseria gonorrhoeae MS11

57.143

98.592

0.563
  recA Neisseria gonorrhoeae strain FA1090

57.143

98.592

0.563
  recA Glaesserella parasuis strain SC1401

57.349

97.746

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

61.3

90.986

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.209

94.366

0.549
  recA Streptococcus pneumoniae D39

58.308

93.239

0.544
  recA Streptococcus pneumoniae Rx1

58.308

93.239

0.544
  recA Streptococcus pneumoniae R6

58.308

93.239

0.544
  recA Streptococcus pneumoniae TIGR4

58.308

93.239

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.202

91.831

0.544
  recA Vibrio cholerae strain A1552

59.202

91.831

0.544
  recA Streptococcus mitis SK321

58.589

91.831

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.523

96.901

0.538
  recA Lactococcus lactis subsp. cremoris KW2

57.576

92.958

0.535
  recA Streptococcus mitis NCTC 12261

57.975

91.831

0.532
  recA Streptococcus pyogenes NZ131

56.287

94.085

0.53
  recA Streptococcus mutans UA159

56.481

91.268

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.312

90.141

0.499

Multiple sequence alignment