Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GJQ55_RS11070 Genome accession   NZ_CP046056
Coordinates   2333975..2335015 (-) Length   346 a.a.
NCBI ID   WP_228345025.1    Uniprot ID   A0A9E8FLQ8
Organism   Venatoribacter cucullus strain ASxL5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2328975..2340015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJQ55_RS11040 (GJQ55_10965) - 2329639..2329842 (+) 204 WP_228345019.1 YgaP family membrane protein -
  GJQ55_RS11045 (GJQ55_10970) - 2329976..2330926 (+) 951 WP_228345020.1 hypothetical protein -
  GJQ55_RS11050 (GJQ55_10975) - 2330945..2331163 (+) 219 WP_228345021.1 hypothetical protein -
  GJQ55_RS11055 (GJQ55_10980) - 2331209..2332099 (+) 891 WP_228345022.1 alpha/beta fold hydrolase -
  GJQ55_RS11060 (GJQ55_10985) - 2332171..2333454 (+) 1284 WP_228345023.1 NAD(P)/FAD-dependent oxidoreductase -
  GJQ55_RS11065 (GJQ55_10990) - 2333479..2333994 (-) 516 WP_228345024.1 regulatory protein RecX -
  GJQ55_RS11070 (GJQ55_10995) recA 2333975..2335015 (-) 1041 WP_228345025.1 recombinase RecA Machinery gene
  GJQ55_RS11075 (GJQ55_11000) - 2335156..2335641 (-) 486 WP_228345026.1 CinA family protein -
  GJQ55_RS11080 (GJQ55_11005) mutS 2335720..2338350 (+) 2631 WP_228345027.1 DNA mismatch repair protein MutS -
  GJQ55_RS11085 (GJQ55_11010) fdxA 2338520..2338843 (+) 324 WP_228345028.1 ferredoxin FdxA -
  GJQ55_RS11090 (GJQ55_11015) rpoS 2338927..2339916 (-) 990 WP_228345029.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37105.64 Da        Isoelectric Point: 5.0315

>NTDB_id=400743 GJQ55_RS11070 WP_228345025.1 2333975..2335015(-) (recA) [Venatoribacter cucullus strain ASxL5]
MDANKQKALDAALSQIERQFGKGAIMKMGEQPREAIPAISTGSLGLDIALGIGGLPMGRIVEIYGPESSGKTTLCLSAMA
QAQKMGKTVAIIDAEHALDPLYAEKLGVDLDTLLVSQPDTGEQALEICDSLVRSGAVDVIVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSVKQGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGQGIYHMGEVIDLGVKCNLVDKSGAWYSYKGDKIGQGKANAAQYLEEHKELAKEIED
QIRAQLLTVQVKGGDIESVVDEEAEA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=400743 GJQ55_RS11070 WP_228345025.1 2333975..2335015(-) (recA) [Venatoribacter cucullus strain ASxL5]
ATGGACGCAAACAAACAGAAAGCCCTCGACGCAGCCCTGAGCCAGATCGAACGTCAGTTCGGTAAAGGCGCCATTATGAA
AATGGGCGAACAACCGCGCGAAGCCATTCCCGCCATTTCTACCGGCTCTCTGGGGCTGGATATCGCCCTTGGTATTGGTG
GCCTGCCGATGGGCCGTATCGTGGAAATCTACGGTCCGGAAAGCTCCGGTAAAACCACCCTGTGTCTGTCGGCCATGGCG
CAGGCGCAGAAAATGGGCAAAACCGTTGCCATTATCGACGCCGAACACGCGCTGGATCCGCTGTATGCCGAAAAGCTGGG
TGTCGATCTGGATACCTTGCTGGTGTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACAGCCTGGTGCGCT
CCGGTGCAGTGGACGTGATTGTGGTCGACTCCGTAGCGGCACTGGTACCGAAAGCCGAAATTGAAGGCGAAATGGGCGAC
AGCCACGTTGGTCTGCAGGCCCGCTTAATGTCACAGGCGCTGCGTAAACTGACCGGTAACGTGAAAAACGCCAACTGTCT
GGTGATCTTTATTAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAATTCTACGCCTCGGTGCGTCTGGATATCCGTCGTACCGGCTCGGTGAAGCAGGGTGATGAAGTGGTGGGTAACGAA
ACCCGCGTCAAAGTGGTTAAAAACAAAGTGTCGCCGCCGTTTAAACAGGCCGAATTCCAGATTATGTACGGTCAGGGCAT
TTACCACATGGGCGAAGTCATCGACCTGGGGGTTAAGTGCAATCTGGTCGATAAATCCGGTGCCTGGTACAGCTACAAGG
GTGACAAGATCGGTCAGGGCAAAGCCAATGCGGCGCAGTACCTGGAAGAGCACAAAGAGCTGGCCAAAGAAATTGAAGAC
CAGATCCGTGCCCAGTTGCTGACCGTGCAGGTGAAGGGTGGCGATATCGAAAGCGTGGTGGATGAAGAAGCCGAAGCCTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.957

94.509

0.775
  recA Acinetobacter baylyi ADP1

71.884

99.711

0.717
  recA Vibrio cholerae strain A1552

75

94.798

0.711
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

94.798

0.711
  recA Acinetobacter baumannii D1279779

73.273

96.243

0.705
  recA Neisseria gonorrhoeae MS11

73.231

93.931

0.688
  recA Neisseria gonorrhoeae MS11

73.231

93.931

0.688
  recA Neisseria gonorrhoeae strain FA1090

73.231

93.931

0.688
  recA Ralstonia pseudosolanacearum GMI1000

73.006

94.22

0.688
  recA Glaesserella parasuis strain SC1401

72.671

93.064

0.676
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.509

0.613
  recA Helicobacter pylori strain NCTC11637

63.914

94.509

0.604
  recA Helicobacter pylori 26695

63.914

94.509

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

92.775

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

95.087

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

59.882

97.977

0.587
  recA Streptococcus pneumoniae R6

58.213

100

0.584
  recA Streptococcus pneumoniae TIGR4

58.213

100

0.584
  recA Streptococcus pneumoniae Rx1

58.213

100

0.584
  recA Streptococcus pneumoniae D39

58.213

100

0.584
  recA Streptococcus mitis NCTC 12261

60.061

94.798

0.569
  recA Streptococcus mitis SK321

60.061

94.798

0.569
  recA Streptococcus pyogenes NZ131

59.816

94.22

0.564
  recA Streptococcus mutans UA159

58.769

93.931

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.514

93.353

0.546
  recA Lactococcus lactis subsp. cremoris KW2

57.669

94.22

0.543

Multiple sequence alignment