Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GJ672_RS04070 Genome accession   NZ_CP046046
Coordinates   800791..801834 (+) Length   347 a.a.
NCBI ID   WP_154295998.1    Uniprot ID   A0A6B8JRX7
Organism   Spiribacter sp. 2438     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 795791..806834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJ672_RS04035 (GJ672_04035) - 796115..797284 (-) 1170 WP_154295992.1 CynX/NimT family MFS transporter -
  GJ672_RS04040 (GJ672_04040) - 797341..797580 (+) 240 WP_154295993.1 hypothetical protein -
  GJ672_RS04045 (GJ672_04045) - 797570..797863 (+) 294 WP_195759550.1 DUF2249 domain-containing protein -
  GJ672_RS04050 (GJ672_04050) - 797823..798854 (-) 1032 WP_154295995.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  GJ672_RS04055 (GJ672_04055) - 798892..799683 (+) 792 WP_229381951.1 VIT1/CCC1 transporter family protein -
  GJ672_RS04060 (GJ672_04060) - 799721..800188 (+) 468 WP_154295996.1 universal stress protein -
  GJ672_RS04065 (GJ672_04065) - 800196..800690 (+) 495 WP_154295997.1 CinA family protein -
  GJ672_RS04070 (GJ672_04070) recA 800791..801834 (+) 1044 WP_154295998.1 recombinase RecA Machinery gene
  GJ672_RS04075 (GJ672_04075) - 801840..802328 (+) 489 WP_229381952.1 regulatory protein RecX -
  GJ672_RS04080 (GJ672_04080) alaS 802325..804931 (+) 2607 WP_154295999.1 alanine--tRNA ligase -
  GJ672_RS04085 (GJ672_04085) - 804952..806229 (+) 1278 WP_154296000.1 aspartate kinase -
  GJ672_RS04090 (GJ672_04090) csrA 806424..806621 (+) 198 WP_154296001.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37184.25 Da        Isoelectric Point: 5.7794

>NTDB_id=400668 GJ672_RS04070 WP_154295998.1 800791..801834(+) (recA) [Spiribacter sp. 2438]
MDEDRKKALGAALGQIEKQFGKGAVMRMGDARAVGNVPVISTGSLTLDVALGIGGIPRGRVIEIYGPESSGKTTLTLQAI
AQAQRAGGTAAFVDAEHALDPEYAGKLGVDVDELLVSQPDTGEQALEIADMLVRSSAVDIVVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTTVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRLGAIKRGDEVIGN
ETRVKVVKNKMAPPFRQAEFEILYGEGISREGELIDLGVKHGLVDKSGAWYSYNGDRIGQGKDNVRNHLKQHPEIAEEID
RALRAQLLRQPAGRDDAEAAAEDQANG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=400668 GJ672_RS04070 WP_154295998.1 800791..801834(+) (recA) [Spiribacter sp. 2438]
ATGGACGAAGATCGGAAAAAGGCGCTGGGCGCGGCGCTCGGGCAGATCGAGAAGCAGTTCGGCAAAGGCGCCGTCATGCG
CATGGGTGACGCCCGAGCCGTGGGCAATGTGCCGGTCATCTCCACCGGCTCACTCACCCTGGACGTGGCACTCGGCATCG
GTGGCATTCCCCGCGGTCGGGTGATCGAGATTTACGGCCCGGAGTCCTCCGGCAAGACCACGCTCACCCTGCAGGCCATT
GCCCAGGCTCAGCGGGCCGGCGGCACCGCGGCTTTCGTGGACGCCGAACATGCCCTGGATCCGGAATACGCCGGCAAACT
GGGGGTGGATGTGGACGAGCTGCTGGTGTCCCAGCCCGATACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTCC
GCTCCAGCGCGGTGGATATCGTGGTTGTGGACTCGGTGGCGGCGCTTACGCCCAAGGCCGAGATCGAGGGCGAAATGGGG
GATTCTCACGTCGGGCTGCAGGCCCGTCTGATGTCCCAGGCGCTTCGCAAGCTCACTGCCAACATCAAGCGCTCCAACAC
CACGGTCGTCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTTGGCAGTCCGGAGACCACCACCGGCGGTAACG
CGCTCAAATTCTACTCCTCGGTACGAATGGACATCCGCCGGCTGGGGGCGATCAAGCGCGGTGATGAAGTGATTGGCAAC
GAGACCCGGGTCAAGGTGGTCAAGAACAAAATGGCGCCGCCTTTCCGCCAGGCCGAGTTCGAGATTCTCTACGGCGAAGG
GATTTCCCGCGAGGGCGAGCTCATTGATCTGGGTGTCAAACACGGCCTGGTGGACAAGTCCGGTGCCTGGTACAGCTACA
ACGGCGACCGGATCGGGCAGGGCAAGGACAATGTCCGTAACCACCTCAAGCAGCATCCGGAAATCGCCGAAGAAATCGAT
CGCGCGCTCCGGGCCCAACTGCTGCGACAGCCGGCGGGGCGGGATGATGCCGAGGCGGCGGCAGAGGATCAGGCCAACGG
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B8JRX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.566

99.712

0.744
  recA Acinetobacter baylyi ADP1

71.93

98.559

0.709
  recA Neisseria gonorrhoeae MS11

75.385

93.66

0.706
  recA Neisseria gonorrhoeae MS11

75.385

93.66

0.706
  recA Neisseria gonorrhoeae strain FA1090

75.385

93.66

0.706
  recA Vibrio cholerae strain A1552

73.78

94.524

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.78

94.524

0.697
  recA Acinetobacter baumannii D1279779

73.78

94.524

0.697
  recA Ralstonia pseudosolanacearum GMI1000

73.585

91.643

0.674
  recA Glaesserella parasuis strain SC1401

68.693

94.813

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.939

94.524

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.732

92.507

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

95.389

0.608
  recA Helicobacter pylori strain NCTC11637

63.72

94.524

0.602
  recA Helicobacter pylori 26695

63.415

94.524

0.599
  recA Streptococcus mutans UA159

63.11

94.524

0.597
  recA Streptococcus mitis NCTC 12261

59.366

100

0.594
  recA Streptococcus mitis SK321

59.366

100

0.594
  recA Streptococcus pyogenes NZ131

62.31

94.813

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

59.302

99.135

0.588
  recA Streptococcus pneumoniae Rx1

61.585

94.524

0.582
  recA Streptococcus pneumoniae D39

61.585

94.524

0.582
  recA Streptococcus pneumoniae R6

61.585

94.524

0.582
  recA Streptococcus pneumoniae TIGR4

61.585

94.524

0.582
  recA Lactococcus lactis subsp. cremoris KW2

60.123

93.948

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

93.66

0.556

Multiple sequence alignment