Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GJD93_RS08670 Genome accession   NZ_CP046045
Coordinates   1580456..1581502 (+) Length   348 a.a.
NCBI ID   WP_004976691.1    Uniprot ID   A0A2A5PID7
Organism   Acinetobacter towneri strain 19110F47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1575456..1586502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS08640 (GJD93_08635) - 1576084..1576818 (-) 735 WP_004976677.1 histidine phosphatase family protein -
  GJD93_RS08645 (GJD93_08640) - 1576876..1577733 (-) 858 WP_131261461.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GJD93_RS08650 (GJD93_08645) - 1577916..1578095 (-) 180 WP_004976682.1 hypothetical protein -
  GJD93_RS08655 (GJD93_08650) - 1578680..1578925 (-) 246 WP_004976684.1 hypothetical protein -
  GJD93_RS08660 (GJD93_08655) - 1579204..1579878 (+) 675 WP_154320772.1 HAD-IA family hydrolase -
  GJD93_RS08665 (GJD93_08660) - 1579871..1580311 (+) 441 WP_019836488.1 RNA-binding S4 domain-containing protein -
  GJD93_RS08670 (GJD93_08665) recA 1580456..1581502 (+) 1047 WP_004976691.1 recombinase RecA Machinery gene
  GJD93_RS08675 (GJD93_08670) - 1581584..1582273 (+) 690 WP_154320773.1 regulatory protein RecX -
  GJD93_RS08685 (GJD93_08680) - 1582786..1583632 (+) 847 Protein_1517 YbgF trimerization domain-containing protein -
  GJD93_RS08690 (GJD93_08685) lpxA 1583704..1584492 (-) 789 WP_019836491.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  GJD93_RS08695 (GJD93_08690) fabZ 1584489..1584977 (-) 489 WP_004976697.1 3-hydroxyacyl-ACP dehydratase FabZ -
  GJD93_RS08700 (GJD93_08695) lpxD 1584980..1586050 (-) 1071 WP_154320775.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37679.15 Da        Isoelectric Point: 5.0394

>NTDB_id=400640 GJD93_RS08670 WP_004976691.1 1580456..1581502(+) (recA) [Acinetobacter towneri strain 19110F47]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELVDLAVQQNIVQKAGAWYSYQGDKIGQGKNNTIRHLEEHPELAKGIEA
IIREQLLTTGQAAPVEDKDEEEFDLLDV

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=400640 GJD93_RS08670 WP_004976691.1 1580456..1581502(+) (recA) [Acinetobacter towneri strain 19110F47]
ATGGATGAGAATAAAAGCAAGGCGTTAAACGCTGCGTTAAGCCAGATTGAAAAACAATTTGGTAAGAACACAGTCATGCG
TCTTGGTGACAACACTGTGCAAGCGGTAGAAGCCGTATCTACAGGCTCATTGACCCTAGATATTGCATTGGGTATTGGTG
GCTTACCTAAAGGTCGTATCATTGAAATTTACGGCCCTGAATCATCAGGTAAAACGACTATGACCTTGCAAGCCATTGCA
GAATGTCAAAAAGCTGGTGGAACTTGTGCCTTTATTGATGCCGAACACGCGCTTGATCCTCAATATGCACGTAAACTTGG
TGTAGATATTGACAATCTTTTAGTATCGCAACCAGACAACGGTGAACAAGCTCTTGAAATTGCCGATATGTTGGTACGCT
CTGGCGCAATCGACATGATTGTGGTCGACTCCGTAGCTGCCTTAACCCCTCGTGCCGAAATTGAAGGCGAAATGGGTGAC
TCACACATGGGCTTACAAGCACGCTTAATGAGCCAAGCCTTGCGTAAAATCACAGGTAATGCCAAACGCTCGAACTGTAT
GGTGATCTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCAGAAACCACAACTGGTGGTAACGCAT
TGAAGTTCTATGCTTCTGTTCGTTTAGATATTCGCCGTGTAGGTCAAGTGAAAGAAGGTGACGAGATTATTGGTTCTGAA
ACCAAAGTCAAAGTTGTGAAAAACAAAATGGCACCTCCATTTAAAGAAGCATTGTTCCAAATTCTTTACGGTAAAGGTGT
TAACCATTTGGGCGAGCTGGTCGATTTAGCTGTTCAACAAAATATCGTGCAAAAAGCTGGTGCTTGGTATTCTTATCAAG
GCGATAAAATTGGTCAAGGTAAAAACAACACCATTCGCCATCTTGAAGAACATCCAGAGCTTGCTAAAGGCATCGAAGCG
ATTATTCGTGAACAACTACTCACGACAGGTCAAGCTGCACCTGTAGAAGATAAAGACGAAGAAGAATTCGACTTACTTGA
TGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PID7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

91.04

99.425

0.905
  recA Acinetobacter baylyi ADP1

90.23

100

0.902
  recA Pseudomonas stutzeri DSM 10701

73.529

97.701

0.718
  recA Vibrio cholerae strain A1552

73.7

93.966

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.966

0.693
  recA Glaesserella parasuis strain SC1401

71.605

93.103

0.667
  recA Ralstonia pseudosolanacearum GMI1000

70.755

91.379

0.647
  recA Neisseria gonorrhoeae MS11

67.593

93.103

0.629
  recA Neisseria gonorrhoeae MS11

67.593

93.103

0.629
  recA Neisseria gonorrhoeae strain FA1090

67.593

93.103

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.682

98.563

0.618
  recA Helicobacter pylori strain NCTC11637

61.739

99.138

0.612
  recA Helicobacter pylori 26695

61.449

99.138

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609
  recA Streptococcus mitis SK321

60.117

97.989

0.589
  recA Streptococcus mitis NCTC 12261

59.824

97.989

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.27

93.678

0.583
  recA Streptococcus mutans UA159

61.89

94.253

0.583
  recA Streptococcus pyogenes NZ131

61.846

93.391

0.578
  recA Streptococcus pneumoniae Rx1

61.656

93.678

0.578
  recA Streptococcus pneumoniae D39

61.656

93.678

0.578
  recA Streptococcus pneumoniae R6

61.656

93.678

0.578
  recA Streptococcus pneumoniae TIGR4

61.656

93.678

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

92.529

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

58.16

96.839

0.563
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.816

0.546

Multiple sequence alignment