Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GJS30_RS09770 Genome accession   NZ_CP045993
Coordinates   1942583..1943626 (+) Length   347 a.a.
NCBI ID   WP_053284988.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1937583..1948626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS09740 (GJS30_09695) ymfI 1937590..1938318 (+) 729 WP_014417800.1 elongation factor P 5-aminopentanone reductase -
  GJS30_RS09745 (GJS30_09700) - 1938394..1938651 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  GJS30_RS09750 (GJS30_09705) - 1938780..1939571 (+) 792 WP_003154149.1 YmfK family protein -
  GJS30_RS09755 (GJS30_09710) - 1939590..1940489 (+) 900 WP_053284989.1 RodZ domain-containing protein -
  GJS30_RS09760 (GJS30_09715) pgsA 1940563..1941144 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GJS30_RS09765 (GJS30_09720) cinA 1941162..1942412 (+) 1251 WP_179156031.1 competence/damage-inducible protein A Machinery gene
  GJS30_RS09770 (GJS30_09725) recA 1942583..1943626 (+) 1044 WP_053284988.1 recombinase RecA Machinery gene
  GJS30_RS09775 (GJS30_09730) - 1943793..1944974 (+) 1182 WP_017417799.1 serine hydrolase -
  GJS30_RS09780 (GJS30_09735) rny 1945267..1946826 (+) 1560 WP_003154140.1 ribonuclease Y -
  GJS30_RS09785 (GJS30_09740) - 1946887..1947681 (+) 795 WP_003154137.1 TIGR00282 family metallophosphoesterase -
  GJS30_RS09790 (GJS30_09745) spoVS 1947881..1948141 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37943.14 Da        Isoelectric Point: 4.6955

>NTDB_id=400056 GJS30_RS09770 WP_053284988.1 1942583..1943626(+) (recA) [Bacillus velezensis strain LABIM22]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREYYGLDNNGVTDKAEEVQEEMELEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=400056 GJS30_RS09770 WP_053284988.1 1942583..1943626(+) (recA) [Bacillus velezensis strain LABIM22]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTCGGCAAAGGTTCCATCATGAAGCT
CGGAGAAAAAACGGATACAAGAATTTCAACGGTGCCAAGCGGTTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTATATGGACCTGAAAGCTCAGGTAAAACGACTGTAGCGCTTCACGCAATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCAGCATTTATTGATGCTGAGCATGCTCTTGATCCTGTTTACGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTTCTGCTTTCTCAGCCGGATACGGGAGAGCAGGCGCTAGAGATTGCTGAAGCGCTGGTGCGAAGCG
GAGCTGTTGATATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATTGAAGGTGACATGGGTGATTCA
CACGTCGGTTTACAGGCGCGTCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGCGCCATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGGGGCCGCGCGCTGA
AATTCTATTCTTCCGTGCGCCTTGAAGTGCGCCGTGCCGAGCAATTAAAGCAGGGCAACGACGTCATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATTATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCGTCGACCTTGGAACTGAACTGGATATCGTCCAAAAAAGCGGTTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGCCAGGGCCGTGAAAACGCCAAGCAGTTCTTAAAGGAAAATAAAGACATCATGCTGATGATTCAGGAACAA
ATCCGTGAATATTACGGTTTGGACAATAACGGTGTAACGGACAAAGCGGAAGAAGTTCAGGAAGAGATGGAATTAGAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

98.198

95.965

0.942
  recA Latilactobacillus sakei subsp. sakei 23K

75.229

94.236

0.709
  recA Streptococcus mutans UA159

66.379

100

0.666
  recA Streptococcus pneumoniae D39

68.485

95.101

0.651
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus pneumoniae Rx1

68.485

95.101

0.651
  recA Streptococcus pneumoniae R6

68.485

95.101

0.651
  recA Streptococcus pneumoniae TIGR4

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus pyogenes NZ131

67.683

94.524

0.64
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Helicobacter pylori 26695

62.974

98.847

0.622
  recA Helicobacter pylori strain NCTC11637

62.974

98.847

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.138

94.236

0.614
  recA Neisseria gonorrhoeae MS11

65.138

94.236

0.614
  recA Neisseria gonorrhoeae MS11

65.138

94.236

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.024

94.524

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Glaesserella parasuis strain SC1401

60.29

99.424

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

94.236

0.597
  recA Acinetobacter baylyi ADP1

60

99.424

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.507

0.591
  recA Vibrio cholerae strain A1552

63.863

92.507

0.591
  recA Pseudomonas stutzeri DSM 10701

62.813

92.219

0.579
  recA Acinetobacter baumannii D1279779

62.617

92.507

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

92.219

0.562

Multiple sequence alignment