Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GJE18_RS04665 Genome accession   NZ_CP045927
Coordinates   931507..932550 (+) Length   347 a.a.
NCBI ID   WP_060550930.1    Uniprot ID   A0A242VIQ5
Organism   Staphylococcus agnetis strain 1379     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 926507..937550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE18_RS04640 (GJE18_04625) ymfI 927430..928134 (+) 705 WP_107368340.1 elongation factor P 5-aminopentanone reductase -
  GJE18_RS04645 (GJE18_04630) - 928186..929058 (+) 873 WP_060550927.1 DUF3388 domain-containing protein -
  GJE18_RS04650 (GJE18_04635) - 929071..929466 (+) 396 WP_060550928.1 helix-turn-helix domain-containing protein -
  GJE18_RS04655 (GJE18_04640) pgsA 929510..930094 (+) 585 WP_037564617.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GJE18_RS04660 (GJE18_04645) - 930194..931339 (+) 1146 WP_107368339.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  GJE18_RS04665 (GJE18_04650) recA 931507..932550 (+) 1044 WP_060550930.1 recombinase RecA Machinery gene
  GJE18_RS04670 (GJE18_04655) rny 932987..934546 (+) 1560 WP_060550931.1 ribonuclease Y -
  GJE18_RS04675 (GJE18_04660) - 934789..935007 (-) 219 WP_037564606.1 hypothetical protein -
  GJE18_RS04680 (GJE18_04665) - 935196..935579 (+) 384 WP_420853501.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37821.80 Da        Isoelectric Point: 5.3338

>NTDB_id=399302 GJE18_RS04665 WP_060550930.1 931507..932550(+) (recA) [Staphylococcus agnetis strain 1379]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISRQGELIDLGVQHDIVDKSGAWYSYNGERMGQGKENVKLFLKEHPDLENEIDR
KLREKLGIFDGDVEESEQESAQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=399302 GJE18_RS04665 WP_060550930.1 931507..932550(+) (recA) [Staphylococcus agnetis strain 1379]
TTGGATAATGAACGTCAAAAAGCACTCGATACAGTAATTAAAAATATGGAAAAATCTTTTGGGAAAGGTGCCGTTATGAA
ACTTGGCGAAAATAAAGATCGTCGTGTTTCTAGTGTTTCTAGTGGTTCTGTAACATTAGATCATGCATTAGGTGTAGGTG
GCTATCCTAAAGGCCGTATTATAGAAGTTTATGGACCTGAAAGCTCAGGTAAAACTACCGTAGCCCTACATGCCATTGCA
GAAGTACAAAAAAATGGTGGCGTGGCTGCATTTATTGACGCAGAACATGCGCTTGATCCTGTTTATGCACAAGCTTTAGG
TGTAGATATTGATAACTTATATTTATCGCAACCGGACCATGGTGAGCAAGGCCTTGAAATTGCTGAGGCGTTCGTTCGTA
GTGGCGCGGTCGACATTATTATCGTAGACTCAGTTGCTGCGTTAACACCGAAAGCTGAAATTGAAGGTGAGATGGGCGAT
ACGCATGTCGGTTTACAAGCACGTCTAATGTCTCAAGCACTACGTAAATTATCGGCAGCAATTTCTAAATCAAATACGAC
TGCCATTTTTATTAACCAAATTCGTGAGAAAGTGGGGGTTATGTTTGGTAACCCTGAAACAACACCAGGTGGTCGGGCAT
TAAAATTCTACAGTTCTGTTCGTTTAGAAGTACGTCGTGCGGAACAATTAAAACAAGGGCAAGATATTGTCGGTAACCGT
ACGAAAATCAAAGTGGTTAAAAATAAAGTTGCTCCACCATTTAAAGTAGCTGAAGTCGATATCATGTATGGTCAAGGTAT
TTCTCGACAAGGTGAACTGATTGACCTTGGTGTACAACATGATATTGTAGACAAGTCTGGAGCTTGGTATTCATATAATG
GTGAACGTATGGGTCAAGGTAAAGAAAACGTGAAGTTATTCTTAAAAGAACATCCTGACTTAGAAAATGAAATTGACCGT
AAACTCCGTGAAAAATTAGGTATTTTCGATGGAGATGTTGAAGAAAGTGAGCAAGAGTCAGCTCAAACTTTATTTGATGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242VIQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.948

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

70.115

100

0.703
  recA Streptococcus pyogenes NZ131

69.605

94.813

0.66
  recA Streptococcus mutans UA159

65.33

100

0.657
  recA Streptococcus pneumoniae D39

66.276

98.271

0.651
  recA Streptococcus pneumoniae Rx1

66.276

98.271

0.651
  recA Streptococcus pneumoniae R6

66.276

98.271

0.651
  recA Streptococcus pneumoniae TIGR4

66.276

98.271

0.651
  recA Streptococcus mitis NCTC 12261

64.451

99.712

0.643
  recA Streptococcus mitis SK321

64.451

99.712

0.643
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.389

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.682

98.847

0.62
  recA Acinetobacter baumannii D1279779

65.031

93.948

0.611
  recA Acinetobacter baylyi ADP1

64.417

93.948

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.804

93.948

0.599
  recA Vibrio cholerae strain A1552

63.804

93.948

0.599
  recA Neisseria gonorrhoeae MS11

63.222

94.813

0.599
  recA Neisseria gonorrhoeae MS11

63.222

94.813

0.599
  recA Neisseria gonorrhoeae strain FA1090

63.222

94.813

0.599
  recA Helicobacter pylori 26695

63.11

94.524

0.597
  recA Helicobacter pylori strain NCTC11637

62.805

94.524

0.594
  recA Ralstonia pseudosolanacearum GMI1000

64.537

90.202

0.582
  recA Pseudomonas stutzeri DSM 10701

61.35

93.948

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.389

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.069

91.931

0.571
  recA Glaesserella parasuis strain SC1401

60.991

93.084

0.568

Multiple sequence alignment