Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DEIPR_RS05355 Genome accession   NC_015161
Coordinates   1108457..1109572 (+) Length   371 a.a.
NCBI ID   WP_013614818.1    Uniprot ID   -
Organism   Deinococcus proteolyticus MRP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103457..1114572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPR_RS05330 (Deipr_1050) soxR 1104854..1105303 (-) 450 WP_013614811.1 redox-sensitive transcriptional activator SoxR -
  DEIPR_RS14155 - 1105357..1105497 (+) 141 WP_169310674.1 hypothetical protein -
  DEIPR_RS05335 (Deipr_1051) - 1105494..1106045 (+) 552 WP_013614812.1 short-chain dehydrogenase -
  DEIPR_RS14160 (Deipr_1052) - 1106042..1106179 (+) 138 WP_013614813.1 hypothetical protein -
  DEIPR_RS05340 (Deipr_1054) - 1106288..1106734 (+) 447 WP_013614815.1 VOC family protein -
  DEIPR_RS05345 (Deipr_1055) - 1106860..1107588 (+) 729 WP_049775079.1 ornithine cyclodeaminase family protein -
  DEIPR_RS05350 (Deipr_1056) thpR 1107792..1108460 (+) 669 WP_013614817.1 RNA 2',3'-cyclic phosphodiesterase -
  DEIPR_RS05355 (Deipr_1057) recA 1108457..1109572 (+) 1116 WP_013614818.1 recombinase RecA Machinery gene
  DEIPR_RS05360 (Deipr_1058) - 1109676..1111175 (-) 1500 WP_013614819.1 CHASE2 domain-containing protein -
  DEIPR_RS05365 (Deipr_1059) - 1111176..1112573 (-) 1398 WP_049775080.1 FecR family protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39318.80 Da        Isoelectric Point: 4.8914

>NTDB_id=39915 DEIPR_RS05355 WP_013614818.1 1108457..1109572(+) (recA) [Deinococcus proteolyticus MRP]
MSKTNPKEIAAGPTDAKERQKAIDTALSQIEKQFGKGSIMKLGAESKLDVQTISTGSMSLDLALGVGGVPRGRVTEIYGP
ESGGKTTLALSIIAQAQKAGGTAAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAMDIVVVDSVA
ALTPKAEIEGDMGDSLPGLQARLMSQALRKLTSILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRK
IGQPIKVGNDAVANTVKVKTVKNKVAAPFKEVELALVYGKGFDQLNDLVTLASDMDIIKKAGSFYSYGDDRIGQGKEKAM
QYIAERPELEDEIRARVLNAIRAGNQTDAAPARDAEADVPASPAEEAEVEA

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=39915 DEIPR_RS05355 WP_013614818.1 1108457..1109572(+) (recA) [Deinococcus proteolyticus MRP]
ATGAGCAAAACCAACCCCAAAGAAATCGCTGCCGGGCCTACCGACGCCAAAGAGCGCCAGAAAGCCATCGACACCGCCCT
GAGCCAGATTGAAAAGCAGTTCGGCAAGGGCTCCATCATGAAGCTGGGCGCCGAGAGCAAGCTGGACGTGCAGACCATTT
CCACCGGCTCCATGAGCCTGGACCTGGCGCTGGGTGTGGGCGGCGTGCCGCGTGGCCGCGTCACCGAGATTTACGGCCCC
GAGTCGGGCGGCAAGACCACCCTGGCCCTGAGCATCATCGCGCAGGCCCAGAAGGCGGGCGGCACCGCAGCCTTTATTGA
CGCCGAGCACGCCCTGGACCCGGTGTACGCCCGCGCGCTGGGTGTGAACACCGACGAACTGCTGGTGTCGCAGCCCGACA
ACGGCGAGCAGGCCCTGGAAATCATGGAGCTGCTGGTCAGAAGCGGCGCGATGGATATCGTGGTGGTGGACTCGGTGGCC
GCCCTGACCCCCAAGGCCGAAATCGAAGGTGACATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCTTGATGAGCCAGGC
GCTGCGCAAGCTGACTTCCATCCTGTCCAAGACCGGCACCGCCGCCATCTTCATCAACCAGGTGCGCGAGAAGATCGGCG
TGATGTACGGCAACCCCGAAACCACCACCGGCGGCCGCGCCCTGAAGTTCTACTCCAGCGTGCGCCTGGACGTGCGCAAA
ATCGGTCAGCCGATCAAGGTGGGCAACGACGCCGTCGCCAACACCGTCAAGGTGAAGACGGTCAAGAACAAGGTCGCCGC
ACCGTTCAAGGAAGTGGAACTGGCACTGGTCTACGGCAAGGGCTTCGACCAGCTGAACGACCTGGTCACGCTGGCCAGCG
ATATGGACATCATCAAGAAGGCCGGTTCTTTTTACTCGTACGGCGACGACCGCATCGGCCAGGGCAAGGAAAAAGCCATG
CAGTACATCGCCGAGCGCCCTGAACTGGAAGATGAAATCCGTGCCCGCGTGCTGAACGCCATCCGGGCTGGCAACCAGAC
CGACGCCGCTCCTGCCCGCGATGCGGAGGCCGACGTGCCTGCCAGCCCGGCCGAGGAAGCCGAAGTCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

89.565

92.992

0.833
  recA Glaesserella parasuis strain SC1401

60.623

95.148

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

58.807

94.879

0.558
  recA Acinetobacter baylyi ADP1

59.538

93.261

0.555
  recA Streptococcus pneumoniae TIGR4

63.467

87.062

0.553
  recA Streptococcus pneumoniae Rx1

63.467

87.062

0.553
  recA Streptococcus pneumoniae R6

63.467

87.062

0.553
  recA Streptococcus pneumoniae D39

63.467

87.062

0.553
  recA Streptococcus mutans UA159

58.286

94.34

0.55
  recA Streptococcus mitis NCTC 12261

63.158

87.062

0.55
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.462

87.601

0.547
  recA Vibrio cholerae strain A1552

62.462

87.601

0.547
  recA Streptococcus mitis SK321

62.848

87.062

0.547
  recA Bacillus subtilis subsp. subtilis str. 168

64.423

84.097

0.542
  recA Acinetobacter baumannii D1279779

62.305

86.523

0.539
  recA Streptococcus pyogenes NZ131

61.61

87.062

0.536
  recA Neisseria gonorrhoeae MS11

60.182

88.679

0.534
  recA Neisseria gonorrhoeae MS11

60.182

88.679

0.534
  recA Neisseria gonorrhoeae strain FA1090

60.182

88.679

0.534
  recA Pseudomonas stutzeri DSM 10701

55.301

94.07

0.52
  recA Helicobacter pylori strain NCTC11637

54.674

95.148

0.52
  recA Helicobacter pylori 26695

54.674

95.148

0.52
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.143

90.566

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.259

87.332

0.518
  recA Ralstonia pseudosolanacearum GMI1000

61.364

83.019

0.509
  recA Lactococcus lactis subsp. cremoris KW2

57.895

87.062

0.504

Multiple sequence alignment