Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GH975_RS09005 Genome accession   NZ_CP045871
Coordinates   1780453..1781496 (-) Length   347 a.a.
NCBI ID   WP_153714202.1    Uniprot ID   A0A5Q2Q919
Organism   Litorivicinus lipolyticus strain IMCC 1097     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1775453..1786496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH975_RS08975 (GH975_08975) - 1775728..1776069 (-) 342 WP_153714196.1 DUF805 domain-containing protein -
  GH975_RS08980 (GH975_08980) - 1776127..1776741 (-) 615 WP_153714197.1 ATP-binding cassette domain-containing protein -
  GH975_RS08985 (GH975_08985) - 1776728..1778239 (-) 1512 WP_170272605.1 ABC transporter permease subunit -
  GH975_RS08990 (GH975_08990) thiB 1778250..1779236 (-) 987 WP_153714199.1 thiamine ABC transporter substrate binding subunit -
  GH975_RS08995 (GH975_08995) - 1779404..1780009 (+) 606 WP_170272606.1 thiamine diphosphokinase -
  GH975_RS09000 (GH975_09000) - 1779976..1780419 (-) 444 WP_153714201.1 NUDIX domain-containing protein -
  GH975_RS09005 (GH975_09005) recA 1780453..1781496 (-) 1044 WP_153714202.1 recombinase RecA Machinery gene
  GH975_RS09010 (GH975_09010) - 1781603..1782274 (-) 672 WP_170272607.1 HdaA/DnaA family protein -
  GH975_RS09015 (GH975_09015) - 1782271..1783218 (-) 948 WP_153714204.1 DUF2066 domain-containing protein -
  GH975_RS09020 (GH975_09020) purM 1783304..1784329 (+) 1026 WP_153714205.1 phosphoribosylformylglycinamidine cyclo-ligase -
  GH975_RS09025 (GH975_09025) purN 1784326..1784946 (+) 621 WP_153714206.1 phosphoribosylglycinamide formyltransferase -
  GH975_RS09030 (GH975_09030) - 1784988..1785677 (+) 690 WP_153714207.1 DUF3108 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37320.58 Da        Isoelectric Point: 4.7896

>NTDB_id=398920 GH975_RS09005 WP_153714202.1 1780453..1781496(-) (recA) [Litorivicinus lipolyticus strain IMCC 1097]
MSDNRNKALDAALGQIERQFGKGAIMRMGDAPIESIPAISTGSLGLDIALGIGGLPVGRIVEIYGPESSGKTTLTLQAIA
ECQKAGGTAAFIDAEHALDPEYAQKLGVNVKELLVSQPDTGEQALEIADMLVRSGGVDLLVIDSVAALTPRAEIEGDMGD
SHVGLQARLMSQALRKITGNIKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNE
TRVKVVKNKVSPPFRQAEFQIIYGKGIYRMGEVIDWGVKEGLVDKAGAWYSYNGDRIGQGKANACRFLEENQSMAQEIEG
ELRRRLLSGPTPEVDQADEVPEDESAV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=398920 GH975_RS09005 WP_153714202.1 1780453..1781496(-) (recA) [Litorivicinus lipolyticus strain IMCC 1097]
ATGAGCGATAACCGCAACAAAGCCCTAGACGCCGCCCTTGGACAAATCGAACGCCAGTTTGGCAAAGGCGCCATTATGCG
CATGGGCGATGCGCCCATTGAATCGATTCCGGCCATTTCGACCGGTTCCTTGGGGCTGGATATTGCACTGGGCATAGGCG
GTTTGCCGGTCGGTCGTATCGTTGAAATTTACGGCCCTGAAAGCTCAGGTAAAACCACACTGACATTGCAGGCGATCGCC
GAATGCCAGAAAGCGGGCGGCACCGCGGCCTTTATCGACGCCGAGCACGCGCTGGACCCTGAATACGCCCAAAAACTGGG
TGTTAACGTCAAAGAACTGCTGGTGTCGCAGCCGGATACCGGTGAACAGGCGCTGGAAATTGCTGACATGCTGGTGCGCT
CCGGTGGTGTTGACCTGTTGGTCATCGACTCGGTGGCGGCGTTGACGCCGCGTGCGGAAATTGAAGGCGACATGGGCGAC
AGCCACGTCGGTTTGCAGGCCCGCTTAATGAGCCAAGCGCTGCGTAAAATAACCGGCAACATTAAACGTTCGAACTGCAT
GGTGATTTTCATCAACCAGATTCGAATGAAAATTGGTGTCATGTTCGGCAGCCCTGAAACCACCACCGGTGGTAACGCCT
TGAAGTTTTACGCCTCGGTGCGTTTGGACATCCGCCGCATTGGCGCGATCAAAGATGGCGACGAAGTGGTCGGTAATGAA
ACCCGCGTCAAAGTGGTCAAGAACAAGGTTTCGCCGCCGTTCCGTCAGGCTGAGTTCCAGATCATTTACGGCAAGGGCAT
CTACCGCATGGGCGAAGTCATTGACTGGGGTGTCAAGGAAGGTCTGGTCGACAAGGCGGGCGCTTGGTACAGCTACAACG
GTGACCGGATTGGTCAAGGCAAAGCCAACGCCTGCCGTTTCTTGGAAGAAAACCAGAGCATGGCCCAGGAAATCGAAGGT
GAATTACGCCGTCGTTTGCTGAGCGGCCCGACGCCAGAGGTCGACCAGGCCGATGAGGTTCCCGAAGACGAAAGTGCTGT
CTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2Q919

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.093

98.847

0.752
  recA Acinetobacter baylyi ADP1

72.886

98.847

0.72
  recA Acinetobacter baumannii D1279779

74.018

95.389

0.706
  recA Ralstonia pseudosolanacearum GMI1000

74.085

94.524

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.866

94.524

0.689
  recA Vibrio cholerae strain A1552

72.866

94.524

0.689
  recA Neisseria gonorrhoeae MS11

72.222

93.372

0.674
  recA Neisseria gonorrhoeae MS11

72.222

93.372

0.674
  recA Neisseria gonorrhoeae strain FA1090

72.222

93.372

0.674
  recA Glaesserella parasuis strain SC1401

66.667

99.424

0.663
  recA Helicobacter pylori strain NCTC11637

63.314

97.406

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.085

91.931

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Helicobacter pylori 26695

62.722

97.406

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

95.389

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

58.523

100

0.594
  recA Streptococcus pneumoniae Rx1

57.386

100

0.582
  recA Streptococcus pneumoniae D39

57.386

100

0.582
  recA Streptococcus pneumoniae R6

57.386

100

0.582
  recA Streptococcus pneumoniae TIGR4

57.386

100

0.582
  recA Streptococcus mitis SK321

57.637

100

0.576
  recA Streptococcus mutans UA159

61.231

93.66

0.573
  recA Streptococcus pyogenes NZ131

60.061

94.524

0.568
  recA Streptococcus mitis NCTC 12261

60.062

93.084

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.084

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.434

91.643

0.545

Multiple sequence alignment