Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MTES_RS01485 Genome accession   NC_015125
Coordinates   305763..306815 (-) Length   350 a.a.
NCBI ID   WP_013583396.1    Uniprot ID   A0A147F1W4
Organism   Microbacterium testaceum StLB037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 300763..311815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTES_RS01475 (MTES_0303) - 302096..304681 (+) 2586 WP_013583394.1 helix-turn-helix transcriptional regulator -
  MTES_RS18735 (MTES_0304) - 304810..305529 (-) 720 WP_231848118.1 regulatory protein RecX -
  MTES_RS01485 (MTES_0305) recA 305763..306815 (-) 1053 WP_013583396.1 recombinase RecA Machinery gene
  MTES_RS01490 (MTES_0306) - 307095..307319 (-) 225 WP_013583397.1 DUF3046 domain-containing protein -
  MTES_RS01495 (MTES_0307) - 307338..307646 (-) 309 WP_013583398.1 helix-turn-helix domain-containing protein -
  MTES_RS01500 (MTES_0308) - 307818..308345 (-) 528 WP_013583399.1 CinA family protein -
  MTES_RS01505 (MTES_0309) pgsA 308342..308929 (-) 588 WP_013583400.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MTES_RS01510 (MTES_0310) - 308929..311655 (-) 2727 WP_043360884.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37164.52 Da        Isoelectric Point: 6.1739

>NTDB_id=39854 MTES_RS01485 WP_013583396.1 305763..306815(-) (recA) [Microbacterium testaceum StLB037]
MPSPAEREKALESALAQIDRQFGKGSVMRLGSDDRAPIETIPTGSVALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEM
GDSHVGLQARLMSQALRKLTGGLNTTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGAWYTYEGEQLGQGKENARNFLIKNADVAAEI
ESKIKNKLGIGAPAAPAEPAADELAARRPA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=39854 MTES_RS01485 WP_013583396.1 305763..306815(-) (recA) [Microbacterium testaceum StLB037]
ATGCCCTCACCCGCAGAGCGCGAAAAGGCCCTCGAGTCGGCCCTTGCGCAGATCGACCGGCAGTTCGGAAAGGGCTCGGT
CATGCGACTGGGCAGCGACGACCGCGCCCCGATCGAGACCATCCCCACCGGCTCCGTCGCCCTCGACGTGGCGCTCGGCA
TCGGCGGTCTTCCCCGCGGTCGCATCATCGAGATCTACGGACCTGAGTCATCCGGTAAGACCACCCTCACGCTCCACGCC
ATCGCCAACGCCCAGCGGGCCGGCGGCATCGCCGCGTTCATCGACGCGGAGCATGCGCTCGACCCCGAGTACGCGAAGAA
GCTCGGTGTCGACATCGATGCTCTGCTCGTGTCGCAGCCCGACACCGGCGAGCAGGCGCTCGAGATCGCCGACATGCTGA
TCCGTTCGGGCGCGATCGACCTGGTCGTGATCGACTCCGTCGCTGCCCTCGTCCCCGAGGCCGAGATCAAGGGTGAGATG
GGCGACTCGCATGTCGGCCTGCAGGCTCGCCTGATGTCGCAGGCTCTGCGCAAGCTCACCGGTGGACTCAACACCACCAA
GACCACCGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTCTTCTTCGGTTCCCCCGAGACGACCGCCGGTGGTA
AGGCTCTCAAGTTCTACGCGTCGGTCCGACTCGACATCCGTCGCATCGAGACGCTGAAGGACGGCACCGAGGCGGTCGGT
AACCGCACGCGCGTCAAGGTCGTGAAGAACAAGATGGCGCCCCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCGT
CGGCATCTCTCGCGAAGGGAGCTTGATCGACTTCGGTGTCGAGCACGGCATCGTCAAGAAGTCGGGCGCCTGGTACACCT
ACGAGGGTGAGCAGCTCGGGCAGGGCAAGGAGAACGCTCGTAACTTCCTCATCAAGAACGCCGACGTGGCCGCCGAGATC
GAGTCGAAGATCAAGAACAAGCTCGGCATCGGTGCTCCGGCCGCTCCGGCGGAGCCCGCGGCCGACGAGCTCGCGGCTCG
CCGCCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A147F1W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.077

96.857

0.64
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

93.143

0.626
  recA Neisseria gonorrhoeae MS11

63.188

98.571

0.623
  recA Neisseria gonorrhoeae MS11

63.188

98.571

0.623
  recA Neisseria gonorrhoeae strain FA1090

63.188

98.571

0.623
  recA Acinetobacter baumannii D1279779

67.391

92

0.62
  recA Acinetobacter baylyi ADP1

66.77

92

0.614
  recA Vibrio cholerae strain A1552

66.149

92

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.149

92

0.609
  recA Ralstonia pseudosolanacearum GMI1000

68.051

89.429

0.609
  recA Streptococcus mitis SK321

61.739

98.571

0.609
  recA Lactococcus lactis subsp. cremoris KW2

63.939

94.286

0.603
  recA Streptococcus mitis NCTC 12261

61.159

98.571

0.603
  recA Helicobacter pylori strain NCTC11637

62.315

96.286

0.6
  recA Helicobacter pylori 26695

62.315

96.286

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.615

92.857

0.6
  recA Latilactobacillus sakei subsp. sakei 23K

64

92.857

0.594
  recA Streptococcus pneumoniae D39

62.727

94.286

0.591
  recA Streptococcus pneumoniae Rx1

62.727

94.286

0.591
  recA Streptococcus pneumoniae R6

62.727

94.286

0.591
  recA Streptococcus pneumoniae TIGR4

62.727

94.286

0.591
  recA Streptococcus pyogenes NZ131

62.31

94

0.586
  recA Glaesserella parasuis strain SC1401

62.769

92.857

0.583
  recA Streptococcus mutans UA159

61.702

94

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

94

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

91.429

0.537

Multiple sequence alignment