Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BR63_RS04825 Genome accession   NZ_CP045798
Coordinates   915173..916204 (-) Length   343 a.a.
NCBI ID   WP_034419825.1    Uniprot ID   A0A7G6E0T3
Organism   Thermanaerosceptrum fracticalcis strain DRI-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 910173..921204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BR63_RS04800 (BR63_04780) - 910970..911230 (-) 261 WP_034419834.1 stage V sporulation protein S -
  BR63_RS04805 (BR63_04785) - 911358..912146 (-) 789 WP_034419832.1 TIGR00282 family metallophosphoesterase -
  BR63_RS04810 (BR63_04790) - 912215..912727 (-) 513 WP_034419830.1 hypothetical protein -
  BR63_RS04815 (BR63_04795) rny 912858..914396 (-) 1539 WP_081907990.1 ribonuclease Y -
  BR63_RS04820 (BR63_04800) - 914702..915172 (-) 471 WP_034419827.1 regulatory protein RecX -
  BR63_RS04825 (BR63_04805) recA 915173..916204 (-) 1032 WP_034419825.1 recombinase RecA Machinery gene
  BR63_RS04830 (BR63_04810) thpR 916279..916854 (-) 576 WP_034419824.1 RNA 2',3'-cyclic phosphodiesterase -
  BR63_RS04835 (BR63_04815) - 916870..918450 (-) 1581 WP_034419823.1 DEAD/DEAH box helicase -
  BR63_RS04840 (BR63_04820) - 918483..919889 (-) 1407 WP_051965370.1 metallophosphoesterase family protein -
  BR63_RS04845 (BR63_04825) - 919886..921139 (-) 1254 WP_034419822.1 competence/damage-inducible protein A -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37004.35 Da        Isoelectric Point: 6.3078

>NTDB_id=397274 BR63_RS04825 WP_034419825.1 915173..916204(-) (recA) [Thermanaerosceptrum fracticalcis strain DRI-13]
MSDKKKALEIALSSIEKQFGKGSIMRLGEASGKLQVDVISTGVLTLDMALGVGGVPRGRVVEIYGPESSGKTTVALHVIA
EAQKNGGTAAFIDAEHALDPIYAKNLGVDIDNLLISQPDTGEQALEIAEALVRSGAIDVIVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLTGAISKSRTTAIFINQIREKVGVMFGNPETTPGGRALKFYASVRMEVRKIETLKQGAEIVGSR
TRVKVVKNKVAPPFKQADFDIMYGEGISREGSIIDLATELDIMNKSGAWYSYNDNRLGQGRENVKQYLKDNPQIAKEIEN
KIRANFNISLLKSSGTDEDYAVE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=397274 BR63_RS04825 WP_034419825.1 915173..916204(-) (recA) [Thermanaerosceptrum fracticalcis strain DRI-13]
ATGTCAGATAAGAAAAAGGCTTTGGAAATAGCGCTTTCTTCCATAGAAAAACAGTTTGGTAAAGGTTCGATTATGCGCCT
GGGTGAAGCCTCAGGCAAGCTGCAGGTTGATGTCATTTCTACCGGGGTTCTCACCCTGGATATGGCCTTAGGTGTAGGCG
GGGTGCCGCGGGGAAGAGTGGTGGAAATCTATGGACCGGAATCTTCCGGTAAAACCACCGTGGCCCTTCATGTCATTGCC
GAAGCTCAGAAAAACGGGGGCACGGCGGCCTTTATCGACGCTGAACATGCTCTAGACCCGATTTACGCAAAAAATCTTGG
CGTGGATATAGACAATCTCCTCATCTCCCAGCCTGATACGGGTGAACAGGCCCTGGAAATTGCCGAAGCTTTGGTAAGAA
GCGGCGCCATCGACGTCATCGTTGTAGACTCGGTAGCTGCTCTGGTTCCCCGGGCGGAGATAGAAGGGGAAATGGGTGAC
GCCCATGTGGGATTGCAGGCCCGTTTAATGTCTCAGGCCCTGCGCAAATTAACAGGGGCTATCAGCAAATCCCGTACAAC
AGCCATTTTCATCAATCAGATTCGCGAAAAAGTGGGTGTGATGTTTGGTAATCCGGAGACTACTCCCGGGGGACGTGCCC
TTAAATTTTATGCCTCTGTGCGGATGGAAGTCAGAAAAATTGAAACGCTAAAGCAAGGTGCGGAGATCGTCGGCAGCCGT
ACGCGGGTCAAAGTGGTAAAAAACAAAGTGGCACCTCCTTTTAAACAAGCCGATTTTGACATTATGTACGGTGAGGGGAT
TTCCCGGGAAGGCAGCATTATCGATTTAGCCACTGAGCTTGATATTATGAATAAAAGCGGCGCCTGGTATTCTTATAACG
ATAATCGTTTAGGCCAGGGCAGGGAAAACGTAAAACAGTACTTAAAAGATAATCCCCAAATTGCTAAGGAAATAGAAAAT
AAAATCAGGGCTAATTTTAATATAAGTTTGCTCAAATCCTCGGGCACCGACGAGGACTACGCGGTGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G6E0T3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.951

95.627

0.688
  recA Latilactobacillus sakei subsp. sakei 23K

70.031

95.335

0.668
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.089

98.542

0.641
  recA Glaesserella parasuis strain SC1401

63.824

99.125

0.633
  recA Ralstonia pseudosolanacearum GMI1000

68.889

91.837

0.633
  recA Streptococcus mitis NCTC 12261

65.559

96.501

0.633
  recA Acinetobacter baumannii D1279779

67.601

93.586

0.633
  recA Acinetobacter baylyi ADP1

67.29

93.586

0.63
  recA Streptococcus mitis SK321

65.257

96.501

0.63
  recA Streptococcus pneumoniae R6

64.955

96.501

0.627
  recA Streptococcus pneumoniae Rx1

64.955

96.501

0.627
  recA Streptococcus pneumoniae D39

64.955

96.501

0.627
  recA Streptococcus pneumoniae TIGR4

64.955

96.501

0.627
  recA Neisseria gonorrhoeae MS11

63.798

98.251

0.627
  recA Neisseria gonorrhoeae strain FA1090

63.798

98.251

0.627
  recA Neisseria gonorrhoeae MS11

63.798

98.251

0.627
  recA Pseudomonas stutzeri DSM 10701

64.072

97.376

0.624
  recA Streptococcus mutans UA159

62.941

99.125

0.624
  recA Streptococcus pyogenes NZ131

64.939

95.627

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

93.586

0.618
  recA Vibrio cholerae strain A1552

66.044

93.586

0.618
  recA Helicobacter pylori 26695

65.528

93.878

0.615
  recA Helicobacter pylori strain NCTC11637

65.528

93.878

0.615
  recA Lactococcus lactis subsp. cremoris KW2

64.22

95.335

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

95.044

0.606
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

94.169

0.595

Multiple sequence alignment