Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DESPR_RS16255 Genome accession   NC_014972
Coordinates   3723639..3724673 (+) Length   344 a.a.
NCBI ID   WP_015725891.1    Uniprot ID   -
Organism   Desulfobulbus propionicus DSM 2032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3718639..3729673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESPR_RS16230 (Despr_3235) - 3718897..3719271 (-) 375 WP_015725886.1 diacylglycerol kinase -
  DESPR_RS16235 (Despr_3236) - 3719506..3719877 (+) 372 WP_015725887.1 helix-turn-helix transcriptional regulator -
  DESPR_RS16240 (Despr_3237) mnmA 3719969..3721021 (+) 1053 WP_015725888.1 tRNA 2-thiouridine(34) synthase MnmA -
  DESPR_RS16245 (Despr_3238) mtaB 3721018..3722352 (+) 1335 WP_015725889.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB -
  DESPR_RS16250 (Despr_3239) - 3722383..3723642 (+) 1260 WP_015725890.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DESPR_RS16255 (Despr_3240) recA 3723639..3724673 (+) 1035 WP_015725891.1 recombinase RecA Machinery gene
  DESPR_RS16260 (Despr_3241) - 3724779..3725516 (-) 738 WP_015725892.1 UPF0280 family protein -
  DESPR_RS16265 (Despr_3242) - 3725545..3725955 (-) 411 WP_015725893.1 NIL domain-containing protein -
  DESPR_RS16270 (Despr_3243) - 3725952..3727145 (-) 1194 WP_015725894.1 homocysteine biosynthesis protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37111.31 Da        Isoelectric Point: 6.3660

>NTDB_id=39705 DESPR_RS16255 WP_015725891.1 3723639..3724673(+) (recA) [Desulfobulbus propionicus DSM 2032]
MTASNDNSEGRLKSVDNAITQIQRQFGKGAIMRLGSTERENIPVIPTGILSVDLALGVGGLPRGRVTEIYGPEASGKTTL
ALHVIAEAQRRGGNAAFIDAEHALDTSYAERLGVDVDNLLISQPDFGEQALEIAEILIRSGGIDVVVVDSVAALVPRAEI
DGNVGDQHVGLQARLMSHAMRKFTGVLNRTNTVLIFINQIRMKIGVMFGNPETTTGGNALKFYSSIRIDIRKTTQIKEGQ
DAIGNLTKIKIVKNKVAPPFKQADVDIIYGEGISRTGDVLDLGVAQGIVDKSGAWYAYQDERIGQGRENAKKYLKEHPDT
LADIERKLRLAFGMPVDAEPPASA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=39705 DESPR_RS16255 WP_015725891.1 3723639..3724673(+) (recA) [Desulfobulbus propionicus DSM 2032]
ATGACAGCATCCAATGACAACAGTGAAGGCCGCCTGAAAAGCGTCGACAACGCCATCACCCAGATTCAGCGGCAGTTCGG
CAAGGGCGCGATCATGCGCCTGGGGTCGACCGAACGCGAAAATATCCCGGTCATCCCCACCGGCATCCTGTCGGTCGACC
TCGCCCTCGGTGTCGGCGGCCTGCCCCGCGGCCGGGTGACCGAGATCTACGGTCCCGAGGCCTCGGGCAAGACCACGCTC
GCCCTGCATGTGATCGCCGAGGCCCAGCGCCGCGGTGGCAACGCCGCCTTCATCGACGCCGAGCACGCCCTGGACACCAG
CTATGCCGAACGGTTGGGCGTGGACGTGGACAATCTGCTCATCTCCCAGCCCGATTTCGGCGAGCAGGCCCTGGAAATCG
CCGAAATCCTCATCCGCAGCGGCGGCATCGACGTGGTGGTGGTCGACTCGGTGGCCGCCCTGGTGCCCCGGGCCGAGATC
GACGGCAATGTCGGCGACCAGCATGTCGGCCTCCAGGCCCGGCTGATGTCGCACGCCATGCGCAAGTTCACCGGCGTGCT
CAACCGCACCAACACCGTGCTCATCTTCATCAACCAGATCCGGATGAAGATCGGGGTGATGTTCGGCAACCCCGAGACCA
CCACCGGCGGCAACGCGCTCAAGTTCTACAGCTCGATCCGCATCGATATCCGCAAGACCACCCAGATCAAGGAAGGCCAG
GACGCCATCGGCAACCTGACCAAGATCAAGATCGTCAAGAACAAGGTGGCCCCGCCCTTCAAACAGGCGGACGTGGACAT
CATCTACGGCGAGGGCATCTCCCGCACCGGCGACGTGCTCGATCTCGGCGTGGCCCAGGGCATTGTCGATAAGAGCGGCG
CCTGGTATGCGTATCAGGACGAGCGCATCGGTCAGGGCCGGGAAAATGCCAAGAAGTATCTCAAGGAGCATCCGGACACC
CTGGCCGACATCGAGCGCAAACTGCGCCTGGCCTTCGGCATGCCCGTCGACGCGGAACCACCCGCCAGCGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

63.609

98.256

0.625
  recA Helicobacter pylori strain NCTC11637

63.609

98.256

0.625
  recA Streptococcus mitis SK321

60.059

98.256

0.59
  recA Streptococcus mutans UA159

61.89

95.349

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

62.654

94.186

0.59
  recA Streptococcus pneumoniae Rx1

60.661

96.802

0.587
  recA Streptococcus pneumoniae D39

60.661

96.802

0.587
  recA Streptococcus pneumoniae R6

60.661

96.802

0.587
  recA Streptococcus pneumoniae TIGR4

60.661

96.802

0.587
  recA Neisseria gonorrhoeae strain FA1090

61.212

95.93

0.587
  recA Neisseria gonorrhoeae MS11

61.212

95.93

0.587
  recA Neisseria gonorrhoeae MS11

61.212

95.93

0.587
  recA Streptococcus mitis NCTC 12261

59.763

98.256

0.587
  recA Pseudomonas stutzeri DSM 10701

62.928

93.314

0.587
  recA Ralstonia pseudosolanacearum GMI1000

63.898

90.988

0.581
  recA Lactococcus lactis subsp. cremoris KW2

60.06

96.802

0.581
  recA Streptococcus pyogenes NZ131

61.162

95.058

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.994

93.314

0.578
  recA Vibrio cholerae strain A1552

61.994

93.314

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.939

95.058

0.57
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.383

97.093

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

59.877

94.186

0.564
  recA Glaesserella parasuis strain SC1401

60.125

93.314

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.658

96.802

0.558
  recA Acinetobacter baumannii D1279779

59.813

93.314

0.558
  recA Acinetobacter baylyi ADP1

59.813

93.314

0.558

Multiple sequence alignment