Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG045_RS06945 Genome accession   NZ_CP045729
Coordinates   1368186..1369250 (-) Length   354 a.a.
NCBI ID   WP_007122834.1    Uniprot ID   H4GLA2
Organism   Limosilactobacillus gastricus strain LG045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1363186..1374250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG045_RS06935 (LG045_06935) mutS 1363786..1366374 (-) 2589 WP_056936671.1 DNA mismatch repair protein MutS -
  LG045_RS06940 (LG045_06940) rny 1366488..1368047 (-) 1560 WP_056936670.1 ribonuclease Y -
  LG045_RS06945 (LG045_06945) recA 1368186..1369250 (-) 1065 WP_007122834.1 recombinase RecA Machinery gene
  LG045_RS06950 (LG045_06950) - 1369339..1369836 (-) 498 WP_056936669.1 CinA family protein -
  LG045_RS06955 (LG045_06955) pgsA 1369968..1370552 (-) 585 WP_056936668.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG045_RS06960 (LG045_06960) - 1370570..1371031 (-) 462 WP_056936667.1 helix-turn-helix domain-containing protein -
  LG045_RS06965 (LG045_06965) yfmH 1371093..1372382 (-) 1290 WP_056936666.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LG045_RS06970 (LG045_06970) - 1372383..1372592 (-) 210 WP_191992221.1 hypothetical protein -
  LG045_RS06975 (LG045_06975) yfmF 1372635..1373632 (-) 998 Protein_1358 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38123.20 Da        Isoelectric Point: 4.7399

>NTDB_id=396416 LG045_RS06945 WP_007122834.1 1368186..1369250(-) (recA) [Limosilactobacillus gastricus strain LG045]
MADQREAALENALRKIEKNFGKGSIMRMGDAADTKIATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA
EVQRRGGTAAYIDAENALDPQYASALGVNIGDLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEIRRGEQLKNGTEVIGNR
AKIKVVKNKVAPPFKRAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYKNDRIGQGRENAKVWLAEHPEAMNELMN
EVRVAYGMEADETVATPETGEVKQETLEEASSED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=396416 LG045_RS06945 WP_007122834.1 1368186..1369250(-) (recA) [Limosilactobacillus gastricus strain LG045]
TTGGCTGATCAACGTGAAGCGGCATTAGAAAATGCCTTGCGTAAAATTGAAAAGAATTTTGGGAAGGGCTCCATCATGCG
GATGGGTGATGCAGCTGATACCAAAATTGCGACTGTTTCTAGTGGTTCATTGGCAATTGATGAGGCGCTGGGAGTCGGGG
GTTACCCGCGGGGACGGATTATTGAAATGTACGGTCCAGAAAGTTCTGGGAAGACGACGGTTGCCTTGCACGCTGTTGCC
GAAGTTCAACGGCGAGGCGGGACGGCTGCTTATATCGATGCCGAAAATGCCTTGGATCCTCAATATGCTTCAGCATTAGG
GGTTAATATTGGCGATCTATTATTATCTCAACCTGATACTGGGGAACAAGGCTTGGAAATTGCGGATGCCTTAATTGCTA
GTGGGGCGGTAGACATCGTGGTTGTTGATTCGGTAGCGGCTCTTGTGCCACGGGCTGAAATTGAGGGTGAAATGGGTGAT
ACCCATGTTGGTCTGCAAGCTCGGTTAATGTCCCAAGCCTTACGGAAGTTATCTGGGGAGATCAATAAAACGAAGACCAT
TGCGATCTTCATTAACCAAATTCGAGAAAAGGTTGGGGTGATGTTTGGTAACCCTGAGACGACCCCTGGTGGACGAGCAT
TGAAGTTCTATTCAACCATTCGACTTGAAATTCGGCGGGGCGAACAATTAAAGAATGGAACTGAAGTAATCGGTAATCGC
GCTAAAATCAAAGTTGTTAAGAACAAGGTTGCGCCACCATTTAAACGGGCCGAAGTCGATATTATGTATGGAGAAGGAAT
TTCCAAGACTGGTGAATTGCTTGATATGGCCGTTGAAAAAGATCTGGTTAATAAGAGCGGGGCTTGGTACTCCTATAAGA
ACGATCGGATTGGTCAAGGTCGTGAAAATGCTAAGGTTTGGTTAGCAGAACATCCTGAAGCCATGAATGAATTGATGAAT
GAAGTTCGAGTGGCTTATGGGATGGAAGCGGACGAAACCGTTGCAACTCCAGAAACCGGCGAAGTAAAGCAAGAAACTTT
AGAAGAAGCTTCTTCAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H4GLA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

77.273

99.435

0.768
  recA Bacillus subtilis subsp. subtilis str. 168

73.653

94.35

0.695
  recA Streptococcus pneumoniae D39

67.416

100

0.678
  recA Streptococcus pneumoniae R6

67.416

100

0.678
  recA Streptococcus pneumoniae TIGR4

67.416

100

0.678
  recA Streptococcus pneumoniae Rx1

67.416

100

0.678
  recA Streptococcus mitis SK321

68.116

97.458

0.664
  recA Streptococcus mitis NCTC 12261

67.826

97.458

0.661
  recA Streptococcus mutans UA159

65.084

100

0.658
  recA Streptococcus pyogenes NZ131

68.675

93.785

0.644
  recA Lactococcus lactis subsp. cremoris KW2

67.262

94.915

0.638
  recA Neisseria gonorrhoeae strain FA1090

61.062

95.763

0.585
  recA Neisseria gonorrhoeae MS11

61.062

95.763

0.585
  recA Neisseria gonorrhoeae MS11

61.062

95.763

0.585
  recA Vibrio cholerae strain A1552

58.382

97.74

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.382

97.74

0.571
  recA Ralstonia pseudosolanacearum GMI1000

64.537

88.418

0.571
  recA Pseudomonas stutzeri DSM 10701

59.347

95.198

0.565
  recA Glaesserella parasuis strain SC1401

56.818

99.435

0.565
  recA Acinetobacter baylyi ADP1

58.187

96.61

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.245

92.373

0.557
  recA Acinetobacter baumannii D1279779

56.447

98.588

0.556
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.788

93.22

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.462

91.808

0.537
  recA Helicobacter pylori 26695

58.282

92.09

0.537
  recA Helicobacter pylori strain NCTC11637

58.282

92.09

0.537

Multiple sequence alignment