Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GFH30_RS05815 Genome accession   NZ_CP045650
Coordinates   1265187..1266224 (-) Length   345 a.a.
NCBI ID   WP_153371328.1    Uniprot ID   A0A5Q0P2Y8
Organism   Acinetobacter wanghuae strain dk386     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1260187..1271224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH30_RS05790 (GFH30_05790) - 1260965..1261829 (-) 865 Protein_1124 YbgF trimerization domain-containing protein -
  GFH30_RS05800 (GFH30_05800) - 1262894..1263166 (-) 273 Protein_1125 regulatory protein RecX -
  GFH30_RS05805 (GFH30_05805) - 1263377..1264498 (+) 1122 WP_153371326.1 hypothetical protein -
  GFH30_RS05810 (GFH30_05810) - 1264495..1265112 (-) 618 WP_153371327.1 regulatory protein RecX -
  GFH30_RS05815 (GFH30_05815) recA 1265187..1266224 (-) 1038 WP_153371328.1 recombinase RecA Machinery gene
  GFH30_RS05820 (GFH30_05820) - 1266369..1266809 (-) 441 WP_153371329.1 RNA-binding S4 domain-containing protein -
  GFH30_RS05825 (GFH30_05825) - 1266802..1267488 (-) 687 WP_153371330.1 HAD-IA family hydrolase -
  GFH30_RS05830 (GFH30_05830) - 1267502..1268350 (+) 849 WP_153371331.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GFH30_RS05835 (GFH30_05835) - 1268411..1269148 (+) 738 WP_153371332.1 histidine phosphatase family protein -
  GFH30_RS05840 (GFH30_05840) - 1269204..1269644 (-) 441 WP_153371333.1 hypothetical protein -
  GFH30_RS13295 - 1269798..1269935 (+) 138 WP_171500996.1 hypothetical protein -
  GFH30_RS05845 (GFH30_05845) rpsT 1270098..1270364 (-) 267 WP_122897879.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37559.15 Da        Isoelectric Point: 5.3107

>NTDB_id=395909 GFH30_RS05815 WP_153371328.1 1265187..1266224(-) (recA) [Acinetobacter wanghuae strain dk386]
MDDNKSKALNAALSQIEKQFGKNSVMRLGDNTVQAVEAVSTGSITLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TRVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVSQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEEHKEMAQTIEK
LIREQLLTPVKVVEEKDEDIDLLDA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=395909 GFH30_RS05815 WP_153371328.1 1265187..1266224(-) (recA) [Acinetobacter wanghuae strain dk386]
ATGGATGATAATAAAAGCAAGGCGCTCAACGCTGCCTTAAGCCAAATTGAAAAACAGTTTGGTAAAAATTCAGTAATGCG
TCTTGGTGATAATACCGTTCAAGCAGTTGAAGCTGTTTCTACTGGTTCAATCACACTAGATATCGCACTCGGTATTGGTG
GTTTACCCAAAGGTCGTATCGTAGAAATCTACGGTCCTGAATCTTCAGGTAAAACCACAATGACATTGCAAGCGATTGCC
GAATGTCAAAAAGCCGGTGGTACATGTGCCTTCATCGATGCCGAACACGCACTTGATCCGCAATATGCGCGTAAACTTGG
TGTAGATATCGACAACTTACTTGTATCGCAACCCGATCACGGTGAGCAAGCGCTTGAAATCGCAGATATGTTGGTACGCT
CTGGTGCCATTGACATGATCGTAGTCGATTCCGTGGCAGCTTTGACCCCTCGCGCTGAGATTGAAGGCGAAATGGGTGAC
TCGCACATGGGGCTACAAGCACGTTTGATGAGCCAAGCACTCCGTAAAATTACGGGTAATGCCAAGCGTTCAAACTGTAT
GGTCATCTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAGCCCTGAAACCACAACAGGCGGTAACGCGC
TTAAATTCTATGCCTCTGTTCGTCTTGACATTCGTCGTATTGGTCAAGTCAAAGAAGGCGATGAAATTGTCGGTTCAGAA
ACCCGCGTAAAAGTGGTGAAGAACAAAATGGCGCCTCCATTTAAAGAAGCGTTATTCCAAATCCTTTACGGTAAAGGCGT
GAACCATTTAGGCGAATTGATTGACCTCGCTGTCAGCCAAGAAATTGTTCAAAAAGCGGGTGCTTGGTATTCTTATCAAG
GCGATAAAATTGGTCAAGGTAAGAACAATACGATTCGTTATCTTGAAGAACATAAAGAAATGGCGCAAACCATTGAAAAA
CTCATTCGCGAACAGCTTCTGACACCTGTCAAAGTGGTTGAAGAAAAAGATGAAGACATCGACCTTTTAGATGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0P2Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

88.252

100

0.893
  recA Acinetobacter baumannii D1279779

87.608

100

0.881
  recA Pseudomonas stutzeri DSM 10701

73.043

100

0.73
  recA Vibrio cholerae strain A1552

74.772

95.362

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.772

95.362

0.713
  recA Ralstonia pseudosolanacearum GMI1000

70.732

95.072

0.672
  recA Glaesserella parasuis strain SC1401

70.37

93.913

0.661
  recA Neisseria gonorrhoeae MS11

67.901

93.913

0.638
  recA Neisseria gonorrhoeae MS11

67.901

93.913

0.638
  recA Neisseria gonorrhoeae strain FA1090

67.901

93.913

0.638
  recA Helicobacter pylori strain NCTC11637

60.819

99.13

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

94.783

0.6
  recA Helicobacter pylori 26695

60.526

99.13

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

95.942

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.89

95.072

0.588
  recA Streptococcus mitis SK321

58.213

100

0.586
  recA Streptococcus pneumoniae Rx1

61.656

94.493

0.583
  recA Streptococcus pneumoniae D39

61.656

94.493

0.583
  recA Streptococcus pneumoniae R6

61.656

94.493

0.583
  recA Streptococcus pneumoniae TIGR4

61.656

94.493

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

93.333

0.577
  recA Streptococcus mitis NCTC 12261

60.736

94.493

0.574
  recA Streptococcus mutans UA159

60.245

94.783

0.571
  recA Streptococcus pyogenes NZ131

60.308

94.203

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

93.043

0.557
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.623

0.551

Multiple sequence alignment