Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GFJ40_RS05925 Genome accession   NZ_CP045646
Coordinates   1385092..1386276 (-) Length   394 a.a.
NCBI ID   WP_014483649.1    Uniprot ID   A0A2K9BQ95
Organism   Bifidobacterium breve strain JSRL01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380092..1391276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFJ40_RS05910 (GFJ40_06150) hpf 1383111..1383773 (-) 663 WP_014483651.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GFJ40_RS05920 (GFJ40_06160) - 1384496..1385095 (-) 600 WP_003830647.1 regulatory protein RecX -
  GFJ40_RS05925 (GFJ40_06165) recA 1385092..1386276 (-) 1185 WP_014483649.1 recombinase RecA Machinery gene
  GFJ40_RS05930 (GFJ40_06170) - 1386583..1386816 (-) 234 WP_003830645.1 DUF3046 domain-containing protein -
  GFJ40_RS05935 (GFJ40_06175) - 1386923..1387441 (-) 519 WP_019727486.1 helix-turn-helix domain-containing protein -
  GFJ40_RS05940 (GFJ40_06180) - 1387501..1388058 (-) 558 WP_003830643.1 CinA family protein -
  GFJ40_RS05945 (GFJ40_06185) pgsA 1388159..1388794 (-) 636 WP_042994222.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 41647.34 Da        Isoelectric Point: 5.8556

>NTDB_id=395852 GFJ40_RS05925 WP_014483649.1 1385092..1386276(-) (recA) [Bifidobacterium breve strain JSRL01]
MALETKPAQDPATETKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPVQNVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL
DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE
KVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDEDAAAAAAVSEAAAADAAKDTKATAAPAAKSSRAKARS

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=395852 GFJ40_RS05925 WP_014483649.1 1385092..1386276(-) (recA) [Bifidobacterium breve strain JSRL01]
ATGGCACTTGAGACCAAGCCGGCCCAAGATCCGGCAACCGAGACCAAGCACGAGCTCGATCCCAAGCGCAAGGCGGCGCT
GGACACTGCTTTGGCGCAGGTCGAAAAAAGCTTCGGCAAGGGCTCGGCCATGCGCCTCGGCGATCAGCCCGTGCAAAATG
TCGAAGTAATCCCTACCGGTTCGCTCGCGCTCGACATGGCGTTGGGCATTGGCGGCCTGCCGAAGGGCCGCATCGTGGAA
ATCTATGGTCCCGAATCGTCCGGTAAAACCACGCTTGCCCTGCATGTGGTGGCCAATGCCCAGAAGAAGGGTGGCGTGGC
CGCATACATTGACGCCGAGCACGCGCTCGATCCGGCCTATGCTCGCAAACTTGGCGTGGACACTGATTCGCTTATCGTTT
CTCAGCCGGACAACGGCGAACAGGCTCTTGAGATTGCGGACATGCTGATTCGTTCTGGCGCGCTTGATGTCATCGTTATC
GATTCGGTGGCGGCTCTGGTGCCAAAGGCCGAGATCGAAGGCGAGATGGGAGACAGCCACGTCGGTTTGCAGGCCCGACT
CATGAGCCAGGCTCTGCGCAAGATGACCGGTGCCTTGGCCCAAGCAGGTACCACCGCCATCTTCATCAACCAGCTACGCG
AAAAGATCGGCGTGTTCTTCGGTAATCCCGAAACCACTACCGGTGGCAAGGCTCTGAAGTTCTATGCCTCTGTGCGTCTT
GACATTCGCCGTATCCAGACCTTGAAGAACGGTGATGAAGCGGTGGGCAACCGTACGCGCGTCAAGGTGGTCAAGAACAA
GATGGCCCCGCCCTTCAAGTCCGCCGAATTCGACATGCTTTACGGCGAAGGTATCTCCCGCGAAGGTTCGGTCATCGACA
TGGCCCAACAGGTCGGCGTGGTCAAGAAGTCCGGCTCGTGGTTCACCTATGAGGGCGACCAGCTTGGTCAGGGTCGAGAG
AAGGTTCGTCAGTTCCTCAAGGACAACCCGGCCATCACCGAAGAGATTGAAAACAAGGTCAAGGCAGAATTTGGTTTGAT
CGGTTCCGCCGATCAGTTTGCCGAAGACGAAGACGCTGCTGCAGCTGCCGCAGTCAGCGAGGCCGCTGCGGCCGATGCCG
CCAAGGACACCAAGGCCACTGCAGCGCCTGCCGCCAAGTCGTCTCGCGCCAAGGCCCGATCATGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(26-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

63.743

86.802

0.553
  recA Pseudomonas stutzeri DSM 10701

65.465

84.518

0.553
  recA Acinetobacter baylyi ADP1

64.583

85.279

0.551
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

85.787

0.546
  recA Streptococcus mitis NCTC 12261

57.808

92.64

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.471

86.294

0.53
  recA Ralstonia pseudosolanacearum GMI1000

66.773

79.442

0.53
  recA Bacillus subtilis subsp. subtilis str. 168

64.506

82.234

0.53
  recA Streptococcus mitis SK321

56.948

93.147

0.53
  recA Neisseria gonorrhoeae strain FA1090

63.804

82.741

0.528
  recA Neisseria gonorrhoeae MS11

63.804

82.741

0.528
  recA Neisseria gonorrhoeae MS11

63.804

82.741

0.528
  recA Glaesserella parasuis strain SC1401

61.538

85.787

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.777

81.98

0.523
  recA Vibrio cholerae strain A1552

63.777

81.98

0.523
  recA Streptococcus mutans UA159

60.355

85.787

0.518
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

82.487

0.513
  recA Lactococcus lactis subsp. cremoris KW2

61.212

83.756

0.513
  recA Streptococcus pneumoniae D39

59.763

85.787

0.513
  recA Streptococcus pneumoniae TIGR4

59.763

85.787

0.513
  recA Streptococcus pneumoniae Rx1

59.763

85.787

0.513
  recA Streptococcus pneumoniae R6

59.763

85.787

0.513
  recA Streptococcus pyogenes NZ131

59.821

85.279

0.51
  recA Helicobacter pylori strain NCTC11637

60.976

83.249

0.508
  recA Helicobacter pylori 26695

60.976

83.249

0.508
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.05

85.533

0.505

Multiple sequence alignment