Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SGGB_RS05620 Genome accession   NC_017576
Coordinates   1122951..1123613 (-) Length   220 a.a.
NCBI ID   WP_012961975.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1117951..1128613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS05600 (SGGB_1071) - 1118006..1119754 (+) 1749 WP_014620146.1 ABC transporter ATP-binding protein -
  SGGB_RS05605 (SGGB_1072) xerS 1120067..1121137 (+) 1071 WP_003064732.1 tyrosine recombinase XerS Machinery gene
  SGGB_RS05610 (SGGB_1073) - 1121243..1121923 (-) 681 WP_009854191.1 LexA family transcriptional regulator -
  SGGB_RS05615 (SGGB_1074) - 1122007..1122954 (-) 948 WP_009854192.1 sensor histidine kinase -
  SGGB_RS05620 (SGGB_1075) braR 1122951..1123613 (-) 663 WP_012961975.1 response regulator transcription factor Regulator
  SGGB_RS05625 (SGGB_1076) - 1123701..1125680 (-) 1980 WP_009854194.1 FtsX-like permease family protein -
  SGGB_RS05630 (SGGB_1077) - 1125682..1126434 (-) 753 WP_009854195.1 ABC transporter ATP-binding protein -
  SGGB_RS05635 (SGGB_1079) - 1126930..1127760 (-) 831 WP_009854197.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25434.10 Da        Isoelectric Point: 4.8371

>NTDB_id=39556 SGGB_RS05620 WP_012961975.1 1122951..1123613(-) (braR) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MKQGKIYIVEDDETIVKLLKQHLSQTYDVFSVTNFRAIKQEVEEIKPDLILIDITLPYFNGFYWTTEIRKTMTLPIIFIS
SSDDEMDTVMALNMGGDDFVSKPFSLTILDAKISAFLRRAYQFTSDNYQLDQFSLSRDGILSNGDDHITLSPTENKILAV
LFEHQNQVVPKEELLEKLWENESFIDQNTLSVNITRLRKKTQPLGFDRIHTVRGVGYLLK

Nucleotide


Download         Length: 663 bp        

>NTDB_id=39556 SGGB_RS05620 WP_012961975.1 1122951..1123613(-) (braR) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGAAACAAGGAAAGATTTATATTGTCGAGGACGATGAAACTATCGTTAAACTTTTAAAACAACATCTTAGTCAAACTTA
TGATGTCTTTAGTGTCACTAATTTTCGAGCTATCAAGCAGGAAGTCGAAGAAATCAAACCTGACCTTATCCTGATTGATA
TCACGTTGCCGTATTTTAATGGTTTTTATTGGACAACAGAAATTCGTAAAACCATGACATTGCCGATTATTTTTATCTCA
TCTAGTGATGATGAAATGGATACTGTCATGGCACTTAACATGGGAGGGGATGATTTTGTGTCAAAACCATTTTCTCTAAC
GATTTTAGACGCCAAAATTTCAGCCTTTTTAAGACGTGCTTACCAGTTTACCTCGGATAATTACCAATTGGACCAGTTTT
CTCTGTCGCGTGACGGAATTTTATCAAACGGTGACGACCATATCACCTTATCTCCGACAGAAAATAAGATTTTAGCGGTT
CTCTTTGAACATCAAAATCAAGTCGTGCCCAAAGAGGAATTACTCGAGAAACTTTGGGAAAATGAAAGTTTCATTGACCA
AAATACCCTTAGCGTTAACATAACACGACTGCGCAAGAAAACACAACCATTAGGTTTTGATCGTATTCACACCGTGAGAG
GAGTTGGCTACCTTCTAAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-219)

Response regulator receiver domain (Response_reg)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.33

99.091

0.459
  vicR Streptococcus mutans UA159

34.322

100

0.368

Multiple sequence alignment