Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VARPA_RS29540 Genome accession   NC_014931
Coordinates   6441224..6442336 (-) Length   370 a.a.
NCBI ID   WP_013544265.1    Uniprot ID   -
Organism   Variovorax paradoxus EPS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6436224..6447336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VARPA_RS29510 (Varpa_5915) sucC 6436679..6437845 (-) 1167 WP_013544259.1 ADP-forming succinate--CoA ligase subunit beta -
  VARPA_RS29515 (Varpa_5916) argC 6438052..6438975 (+) 924 WP_013544260.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  VARPA_RS29520 (Varpa_5917) - 6439000..6439728 (-) 729 WP_013544261.1 hypothetical protein -
  VARPA_RS29525 (Varpa_5918) yiaA 6439846..6440286 (+) 441 WP_013544262.1 inner membrane protein YiaA -
  VARPA_RS29530 (Varpa_5919) - 6440297..6440728 (-) 432 WP_013544263.1 hypothetical protein -
  VARPA_RS29535 (Varpa_5920) recX 6440709..6441170 (-) 462 WP_013544264.1 recombination regulator RecX -
  VARPA_RS29540 (Varpa_5921) recA 6441224..6442336 (-) 1113 WP_013544265.1 recombinase RecA Machinery gene
  VARPA_RS29545 (Varpa_5922) - 6442484..6442969 (+) 486 WP_013544266.1 MarR family winged helix-turn-helix transcriptional regulator -
  VARPA_RS29550 (Varpa_5923) - 6443032..6443706 (+) 675 WP_013544267.1 response regulator transcription factor -
  VARPA_RS29555 (Varpa_5924) - 6443734..6444690 (-) 957 WP_013544268.1 hypothetical protein -
  VARPA_RS29560 (Varpa_5925) - 6444837..6446279 (+) 1443 WP_013544269.1 sensor histidine kinase -
  VARPA_RS29565 (Varpa_5926) - 6446276..6447019 (+) 744 WP_013544270.1 HEAT repeat domain-containing protein -
  VARPA_RS29570 (Varpa_5927) - 6447035..6447232 (-) 198 WP_013544271.1 hypothetical protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39324.18 Da        Isoelectric Point: 5.2231

>NTDB_id=39556 VARPA_RS29540 WP_013544265.1 6441224..6442336(-) (recA) [Variovorax paradoxus EPS]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEVIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADAGSEPEKAEKPAKAPKADKAAAE

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=39556 VARPA_RS29540 WP_013544265.1 6441224..6442336(-) (recA) [Variovorax paradoxus EPS]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTGCAAGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTGGGCGAAGGCGAGGCGCTGGAAGACATCCAGGTGGTCTCCA
CCGGCTCGCTCGGCCTGGACATCGCCCTGGGCGTCGGCGGCTTGCCGCGCGGCCGGGTGATCGAGATCTACGGCCCGGAA
TCGTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGCCATGCAGAAGCAGGCCGGCACCTGCGCTTTCGTCGACGC
CGAACACGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GTGAACAGGCGCTCGAAATCGTCGACTCGCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTCATCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGTTCGCCTGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTT
CAAGACGGCGGAGTTCGACATCCTCTTCGGCGAAGGCATCAGCCGCGAAGGCGAAGTCATCGACATGGGCGTCACCGCCA
AGATCGTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGTGACAACGCCCGCGAATTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTGGCCGCCGA
TGCAGGGTCGGAGCCGGAAAAGGCCGAGAAGCCTGCCAAGGCGCCCAAGGCCGACAAGGCGGCGGCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.525

92.162

0.751
  recA Neisseria gonorrhoeae MS11

68.406

93.243

0.638
  recA Neisseria gonorrhoeae MS11

68.406

93.243

0.638
  recA Neisseria gonorrhoeae strain FA1090

68.406

93.243

0.638
  recA Pseudomonas stutzeri DSM 10701

72.086

88.108

0.635
  recA Acinetobacter baylyi ADP1

71.779

88.108

0.632
  recA Acinetobacter baumannii D1279779

71.166

88.108

0.627
  recA Glaesserella parasuis strain SC1401

71.296

87.568

0.624
  recA Vibrio cholerae strain A1552

69.909

88.919

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.909

88.919

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.797

93.243

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.861

89.459

0.589
  recA Helicobacter pylori 26695

64.939

88.649

0.576
  recA Helicobacter pylori strain NCTC11637

64.939

88.649

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

88.378

0.57
  recA Streptococcus mutans UA159

59.155

95.946

0.568
  recA Streptococcus pneumoniae TIGR4

58.333

97.297

0.568
  recA Streptococcus pneumoniae Rx1

58.333

97.297

0.568
  recA Streptococcus pneumoniae D39

58.333

97.297

0.568
  recA Streptococcus pneumoniae R6

58.333

97.297

0.568
  recA Streptococcus mitis SK321

59.249

93.514

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

62.121

89.189

0.554
  recA Lactococcus lactis subsp. cremoris KW2

61.631

89.459

0.551
  recA Streptococcus pyogenes NZ131

61.702

88.919

0.549
  recA Streptococcus mitis NCTC 12261

60.725

89.459

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

86.757

0.53

Multiple sequence alignment