Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LS451_RS00660 Genome accession   NZ_CP045563
Coordinates   131658..132770 (-) Length   370 a.a.
NCBI ID   WP_056958779.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis strain LS451     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 126658..137770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS451_RS00630 (LS451_00635) - 126881..128278 (-) 1398 WP_225361976.1 ABC transporter ATP-binding protein -
  LS451_RS07055 - 128483..128662 (-) 180 Protein_127 helix-turn-helix domain-containing protein -
  LS451_RS00640 (LS451_00645) tnpA 129101..129499 (+) 399 WP_128492922.1 IS200/IS605 family transposase -
  LS451_RS00645 (LS451_00650) - 129499..130674 (+) 1176 WP_153198622.1 RNA-guided endonuclease TnpB family protein -
  LS451_RS00650 (LS451_00655) - 130828..131151 (+) 324 WP_056958776.1 MFS transporter -
  LS451_RS00655 (LS451_00660) - 131278..131592 (+) 315 WP_056958777.1 helix-turn-helix domain-containing protein -
  LS451_RS00660 (LS451_00665) recA 131658..132770 (-) 1113 WP_056958779.1 recombinase RecA Machinery gene
  LS451_RS00665 (LS451_00670) - 132983..133690 (+) 708 WP_014081464.1 AzlC family ABC transporter permease -
  LS451_RS00670 (LS451_00675) - 133677..134003 (+) 327 WP_014081465.1 AzlD domain-containing protein -
  LS451_RS00675 - 134038..134214 (-) 177 WP_014081466.1 hypothetical protein -
  LS451_RS00680 (LS451_00680) - 134230..134754 (-) 525 WP_056958780.1 GNAT family N-acetyltransferase -
  LS451_RS00685 (LS451_00685) - 134840..136018 (-) 1179 WP_056958783.1 thiolase family protein -
  LS451_RS00690 (LS451_00690) - 136105..136650 (+) 546 WP_014081469.1 hypothetical protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39588.06 Da        Isoelectric Point: 5.3960

>NTDB_id=395180 LS451_RS00660 WP_056958779.1 131658..132770(-) (recA) [Fructilactobacillus sanfranciscensis strain LS451]
MASSSKKNAQDARQAELDKALKQIKKEFGTGAIMRMGETPENTVSAISTGILSLDIALGVGGFPRGRVVEIFGAESSGKT
TIALQTVAETQKNGGTAAYIDAENAMDPEYAKALGVDIDNLLLSQPGTGEEGLRIADALIGSGAIDLVVVDSVAALVPKA
EIEGDIGDSHVGLQARLMSQALRKLTANINKTNTVVIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLRVSGTKQQKD
GQEVVGKETKIKVAKNKVAPPFKTVDTFMSFGKGIEPVADMVNLAVDKDIIDKSGSWYSYGEERLGQGLNKTVANLNEKP
ELVEELIHKVRVAYGIEKEEPAKSEKAPKDDKTDKATKDPKVEDNSTLDI

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=395180 LS451_RS00660 WP_056958779.1 131658..132770(-) (recA) [Fructilactobacillus sanfranciscensis strain LS451]
ATGGCCTCAAGTTCTAAGAAAAACGCTCAAGATGCTCGTCAAGCTGAGCTTGATAAAGCATTAAAACAAATAAAAAAAGA
ATTTGGTACCGGAGCTATCATGCGAATGGGTGAAACCCCTGAAAATACTGTTAGTGCAATCTCTACTGGAATTTTATCAT
TAGATATTGCCCTTGGTGTTGGTGGATTTCCTCGTGGTCGTGTGGTCGAAATTTTCGGTGCTGAATCTTCAGGTAAGACA
ACTATTGCCTTACAAACTGTTGCAGAAACACAAAAAAATGGTGGTACTGCTGCCTATATTGATGCAGAAAATGCCATGGA
TCCCGAATATGCTAAGGCATTAGGGGTTGATATTGATAATCTACTTCTTTCACAACCAGGAACTGGTGAAGAAGGCCTTC
GAATTGCTGATGCCTTAATTGGTTCAGGTGCAATTGATTTAGTCGTAGTCGATTCTGTTGCTGCTTTAGTTCCTAAAGCA
GAAATTGAAGGTGACATTGGTGATTCCCACGTTGGTTTACAAGCCCGTTTGATGTCTCAAGCCCTTCGTAAATTAACTGC
CAACATCAACAAAACCAATACCGTTGTAATTTTCATTAATCAACTTCGGGAAAAAGTTGGTGTGATGTTTGGTAATCCTG
AAACTACCCCTGGTGGTCGTGCATTGAAATTCTATTCCAGTGTTCGTCTCCGAGTTAGTGGAACCAAACAACAAAAAGAC
GGTCAAGAAGTGGTTGGGAAAGAAACTAAGATTAAAGTTGCCAAAAACAAGGTTGCTCCTCCATTCAAGACAGTTGATAC
CTTCATGAGTTTTGGTAAAGGGATTGAACCCGTTGCTGACATGGTGAACTTAGCAGTTGATAAAGATATTATCGACAAAT
CTGGTTCATGGTACTCATATGGTGAAGAACGTTTAGGACAAGGACTTAACAAAACTGTTGCTAACTTGAACGAAAAGCCT
GAATTAGTTGAAGAACTAATCCACAAGGTTCGAGTAGCTTACGGAATTGAAAAAGAAGAACCTGCTAAATCTGAAAAAGC
TCCTAAAGACGATAAGACTGATAAAGCAACAAAGGATCCTAAAGTAGAAGATAATTCAACTTTAGATATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

60.548

98.649

0.597
  recA Streptococcus mutans UA159

59.946

99.189

0.595
  recA Streptococcus mitis SK321

60.274

98.649

0.595
  recA Streptococcus pneumoniae TIGR4

59.78

98.108

0.586
  recA Streptococcus pneumoniae D39

59.78

98.108

0.586
  recA Streptococcus pneumoniae R6

59.78

98.108

0.586
  recA Streptococcus pneumoniae Rx1

59.78

98.108

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

65.854

88.649

0.584
  recA Streptococcus pyogenes NZ131

61.96

93.784

0.581
  recA Lactococcus lactis subsp. cremoris KW2

60.519

93.784

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

61.846

87.838

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.938

87.027

0.522
  recA Neisseria gonorrhoeae MS11

60.759

85.405

0.519
  recA Neisseria gonorrhoeae MS11

60.759

85.405

0.519
  recA Neisseria gonorrhoeae strain FA1090

60.759

85.405

0.519
  recA Glaesserella parasuis strain SC1401

53.221

96.486

0.514
  recA Acinetobacter baumannii D1279779

59.048

85.135

0.503
  recA Acinetobacter baylyi ADP1

57.944

86.757

0.503
  recA Ralstonia pseudosolanacearum GMI1000

59.105

84.595

0.5
  recA Vibrio cholerae strain A1552

57.68

86.216

0.497
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.68

86.216

0.497
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.006

91.081

0.492
  recA Pseudomonas stutzeri DSM 10701

56.508

85.135

0.481
  recA Helicobacter pylori strain NCTC11637

53.354

88.649

0.473
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.354

88.649

0.473
  recA Helicobacter pylori 26695

53.049

88.649

0.47

Multiple sequence alignment