Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LF543_RS06630 Genome accession   NZ_CP045562
Coordinates   1299242..1300378 (+) Length   378 a.a.
NCBI ID   WP_010022075.1    Uniprot ID   A0AAE6P1U1
Organism   Fructilactobacillus fructivorans strain LF543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1294242..1305378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF543_RS06610 (LF543_06555) - 1296210..1296527 (+) 318 WP_010022067.1 helix-turn-helix domain-containing protein -
  LF543_RS06615 (LF543_06560) - 1296508..1296918 (+) 411 WP_010022069.1 ImmA/IrrE family metallo-endopeptidase -
  LF543_RS06620 (LF543_06565) - 1296969..1298663 (-) 1695 WP_010022071.1 oleate hydratase -
  LF543_RS06625 (LF543_06570) - 1298903..1299136 (+) 234 WP_010022072.1 hypothetical protein -
  LF543_RS06630 (LF543_06575) recA 1299242..1300378 (+) 1137 WP_010022075.1 recombinase RecA Machinery gene
  LF543_RS06635 (LF543_06580) - 1300446..1301573 (-) 1128 WP_010022076.1 nuclease-related domain-containing protein -
  LF543_RS06640 (LF543_06585) - 1301703..1303061 (-) 1359 WP_010022077.1 cytosine permease -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40110.51 Da        Isoelectric Point: 7.0415

>NTDB_id=395176 LF543_RS06630 WP_010022075.1 1299242..1300378(+) (recA) [Fructilactobacillus fructivorans strain LF543]
MANSKNSADGRQIELDKALSKIKKEFGTGAIMRMGESPNQNVDSISTGILSLDIALGIGGFPRGRVVEIFGAESSGKTTI
ALQTVAALQQAGGTAAYIDAENAMDPEYAKSLGVNIDSLLLSQPGTGEEGLQIADALVQSGAIDLIVVDSVAALVPKSEI
EGDIGDSHVGLQARLMSQALRKLASSINKTNTVVIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLRVSSGKQSKEGQ
DVVGRETKIKVVKNKVAPPFKTVDTLMSFGKGIEPIADMVNLAVDKDIVDKSGSWYSYGEKRLGQGLNKTVANLGDKPEM
VEEIKQKVREAYGIANDEESKDDDNGKDAKSKSTDDKATTKKATKASAKKDSGTKLDV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=395176 LF543_RS06630 WP_010022075.1 1299242..1300378(+) (recA) [Fructilactobacillus fructivorans strain LF543]
ATGGCAAATTCTAAAAACAGTGCAGACGGGCGTCAAATCGAGCTCGACAAAGCACTTAGCAAGATTAAGAAAGAATTTGG
GACTGGTGCTATTATGCGCATGGGTGAATCACCTAACCAGAACGTGGATTCCATCTCAACCGGTATCTTATCATTAGATA
TCGCCCTTGGAATCGGTGGTTTCCCGCGTGGTCGTGTAGTTGAGATTTTCGGTGCCGAGTCATCTGGTAAGACTACCATT
GCCCTTCAAACCGTTGCTGCTTTGCAACAGGCTGGTGGGACAGCCGCATATATCGATGCTGAAAACGCAATGGATCCTGA
ATACGCCAAAAGTCTTGGTGTTAACATTGATAGCCTTTTGTTATCACAGCCAGGAACAGGTGAAGAAGGACTTCAGATTG
CCGATGCCTTGGTTCAATCCGGGGCCATCGACTTAATCGTTGTCGATTCAGTTGCAGCTCTTGTTCCTAAGTCTGAAATT
GAGGGTGACATTGGTGACTCTCACGTTGGTTTGCAGGCTCGTTTAATGTCACAGGCCCTTCGAAAGTTAGCTTCTAGTAT
CAATAAGACCAACACGGTGGTCATCTTCATTAACCAACTAAGAGAAAAAGTTGGTGTGATGTTTGGTAACCCTGAAACCA
CACCTGGTGGTCGTGCCCTTAAGTTCTACTCAAGTGTTCGACTTCGTGTTAGTTCCGGTAAGCAATCAAAGGAAGGCCAA
GATGTCGTTGGCCGAGAAACCAAGATTAAGGTTGTCAAGAACAAGGTGGCTCCTCCATTTAAGACCGTTGATACCCTGAT
GAGTTTTGGTAAAGGAATTGAACCAATTGCCGACATGGTCAACTTAGCGGTTGACAAGGACATCGTTGACAAGTCTGGAT
CATGGTACTCATACGGTGAGAAACGATTGGGACAGGGTCTAAACAAGACCGTTGCCAACCTTGGTGACAAACCTGAGATG
GTCGAAGAAATTAAGCAAAAAGTCAGAGAAGCATATGGCATCGCCAATGATGAAGAATCAAAGGATGATGACAATGGTAA
GGATGCTAAATCCAAGTCAACTGACGATAAGGCAACTACTAAGAAAGCAACAAAGGCAAGTGCCAAAAAAGATAGTGGAA
CTAAATTAGACGTTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

64.329

86.772

0.558
  recA Streptococcus mutans UA159

58.774

94.974

0.558
  recA Streptococcus pneumoniae TIGR4

58.31

93.915

0.548
  recA Streptococcus pneumoniae Rx1

58.31

93.915

0.548
  recA Streptococcus pneumoniae D39

58.31

93.915

0.548
  recA Streptococcus pneumoniae R6

58.31

93.915

0.548
  recA Streptococcus mitis SK321

57.5

95.238

0.548
  recA Streptococcus mitis NCTC 12261

57.5

95.238

0.548
  recA Lactococcus lactis subsp. cremoris KW2

60.661

88.095

0.534
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

86.508

0.534
  recA Streptococcus pyogenes NZ131

60.18

88.36

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.41

86.508

0.505
  recA Acinetobacter baylyi ADP1

58.075

85.185

0.495
  recA Acinetobacter baumannii D1279779

58.861

83.598

0.492
  recA Neisseria gonorrhoeae MS11

56.061

87.302

0.489
  recA Neisseria gonorrhoeae strain FA1090

56.061

87.302

0.489
  recA Neisseria gonorrhoeae MS11

56.061

87.302

0.489
  recA Pseudomonas stutzeri DSM 10701

58.095

83.333

0.484
  recA Vibrio cholerae strain A1552

56.832

85.185

0.484
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.832

85.185

0.484
  recA Glaesserella parasuis strain SC1401

54.655

88.095

0.481
  recA Ralstonia pseudosolanacearum GMI1000

58.147

82.804

0.481
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.786

90.212

0.476
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

51.775

89.418

0.463
  recA Helicobacter pylori 26695

51.976

87.037

0.452
  recA Helicobacter pylori strain NCTC11637

51.672

87.037

0.45

Multiple sequence alignment