Detailed information NTG0394043

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: FS418_RS19525
• Genome accession: NZ_CP045427
• Coordinates: 4579624..4580682 (-)
• Length: 352 a.a.
• NCBI ID: WP_142874679.1
• Uniprot ID: A0AAJ4E0I8
• Organism: Shewanella sp. YLB-09
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4574624..4585682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FS418_RS19515 (FS418_19615)	csrA	4575882..4576079 (-)	198	WP_142874677.1	carbon storage regulator CsrA	-
FS418_RS19520 (FS418_19620)	alaS	4576592..4579216 (-)	2625	WP_142874678.1	alanine--tRNA ligase	-
FS418_RS19525 (FS418_19625)	recA	4579624..4580682 (-)	1059	WP_142874679.1	recombinase RecA	Machinery gene
FS418_RS19530 (FS418_19630)	mutS	4581035..4583602 (+)	2568	WP_142874680.1	DNA mismatch repair protein MutS	-
FS418_RS19535 (FS418_19635)	rpoS	4583993..4584964 (-)	972	WP_142874681.1	RNA polymerase sigma factor RpoS	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37747.38 Da
• Isoelectric Point: 5.3288

>NTDB_id=394043 FS418_RS19525 WP_142874679.1 4579624..4580682(-) (recA) [Shewanella sp. YLB-09]
MKIDANKEKALNAVLGQIEKQFGKGSIMKLGENRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLEV
IAAAQREGRVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEVIG
NETRVKVVKNKIAAPFKQAEFQILYGKGINRTGELVDLGVIHKLVEKAGAWYSYKGNKIGQGRANAGKYLIEHPEIATEI
ETALRGMLLASPDAAESATGDENVDLETGEVF

Nucleotide

• Length: 1059 bp

>NTDB_id=394043 FS418_RS19525 WP_142874679.1 4579624..4580682(-) (recA) [Shewanella sp. YLB-09]
ATGAAGATTGATGCGAACAAAGAGAAAGCACTGAATGCCGTTTTAGGACAAATTGAAAAACAGTTCGGTAAAGGCTCTAT
CATGAAACTGGGCGAGAACCGCTCAATGGATGTTGAGACTATCTCTACAGGTTCTCTTTCTTTGGACGTTGCACTGGGTG
CCGGTGGACTTCCTTTAGGACGTATCGTAGAGATTTACGGACCTGAATCTTCTGGTAAAACGACACTGACTCTAGAAGTG
ATTGCAGCGGCTCAACGTGAAGGTAGAGTGTGTGCCTTTATCGATGCAGAGCATGCCTTAGACCCAATTTATGCTAAAAA
ATTAGGTGTCGACATCGATAACCTACTTTGTTCTCAACCCGATACTGGTGAGCAAGCGTTGGAAATTTGTGATGCCTTGA
CCCGTTCTGGTGCCGTTGATGTCATCGTCGTCGATTCGGTTGCGGCCCTAACGCCAAAAGCTGAGATTGAAGGCGAGATC
GGTGATTCACATATGGGGCTAGCGGCTCGTATGATGAGCCAAGCAATGCGTAAGCTTGCCGGTAACCTGAAACAAACCAA
TACAATGCTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTCATGTTCGGTAACCCTGAAACCACAACCGGTGGTA
ATGCACTTAAGTTTTACGCTTCTGTACGTCTCGATATTCGCCGTATCGGTGCAATCAAAGATCGTGACGAAGTTATCGGT
AACGAGACCCGTGTAAAAGTGGTTAAAAACAAGATTGCCGCACCGTTTAAGCAGGCTGAATTCCAAATTCTTTATGGGAA
AGGCATCAACCGTACCGGTGAATTAGTCGACCTTGGTGTGATACATAAATTAGTCGAGAAAGCCGGTGCTTGGTACAGCT
ACAAAGGCAATAAAATAGGTCAGGGACGTGCAAATGCGGGTAAGTATCTAATTGAACATCCTGAAATTGCGACAGAAATT
GAAACTGCACTTCGTGGTATGTTACTCGCCTCTCCAGATGCGGCAGAGTCAGCTACAGGCGATGAGAATGTGGATCTCGA
GACTGGTGAAGTTTTTTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae O1 biovar El Tor strain E7946	78.963	98.58	0.778
recA	Vibrio cholerae strain A1552	78.963	98.58	0.778
recA	Pseudomonas stutzeri DSM 10701	71.387	98.295	0.702
recA	Acinetobacter baylyi ADP1	71.098	98.295	0.699
recA	Acinetobacter baumannii D1279779	72.036	93.466	0.673
recA	Glaesserella parasuis strain SC1401	67.341	98.295	0.662
recA	Ralstonia pseudosolanacearum GMI1000	70.126	90.341	0.634
recA	Neisseria gonorrhoeae MS11	67.802	91.761	0.622
recA	Neisseria gonorrhoeae MS11	67.802	91.761	0.622
recA	Neisseria gonorrhoeae strain FA1090	67.802	91.761	0.622
recA	Streptococcus mitis SK321	61.404	97.159	0.597
recA	Streptococcus pneumoniae R6	63.415	93.182	0.591
recA	Streptococcus pneumoniae Rx1	63.415	93.182	0.591
recA	Streptococcus pneumoniae D39	63.415	93.182	0.591
recA	Streptococcus pneumoniae TIGR4	63.415	93.182	0.591
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	61.538	96.023	0.591
recA	Streptococcus mitis NCTC 12261	62.805	93.182	0.585
recA	Streptococcus pyogenes NZ131	61.585	93.182	0.574
recA	Helicobacter pylori strain NCTC11637	61.656	92.614	0.571
recA	Streptococcus mutans UA159	61.28	93.182	0.571
recA	Latilactobacillus sakei subsp. sakei 23K	58.48	97.159	0.568
recA	Helicobacter pylori 26695	61.35	92.614	0.568
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.121	94.034	0.565
recA	Bacillus subtilis subsp. subtilis str. 168	61.371	91.193	0.56
recA	Lactococcus lactis subsp. cremoris KW2	60.061	93.182	0.56
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.952	89.489	0.545