Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FIU88_RS14760 Genome accession   NZ_CP045399
Coordinates   3183344..3184402 (-) Length   352 a.a.
NCBI ID   WP_016853507.1    Uniprot ID   A0A5P9HFV7
Organism   Halomonas sp. THAF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3178344..3189402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU88_RS14745 (FIU88_14775) - 3178630..3179880 (-) 1251 WP_016853510.1 aspartate kinase -
  FIU88_RS14750 (FIU88_14780) alaS 3179984..3182590 (-) 2607 WP_152479727.1 alanine--tRNA ligase -
  FIU88_RS14755 (FIU88_14785) - 3182867..3183340 (-) 474 WP_152479728.1 regulatory protein RecX -
  FIU88_RS14760 (FIU88_14790) recA 3183344..3184402 (-) 1059 WP_016853507.1 recombinase RecA Machinery gene
  FIU88_RS14765 (FIU88_14795) - 3184561..3185055 (-) 495 WP_152479729.1 CinA family protein -
  FIU88_RS14770 (FIU88_14800) mutS 3185377..3187959 (+) 2583 WP_152479730.1 DNA mismatch repair protein MutS -
  FIU88_RS14775 (FIU88_14805) fdxA 3188152..3188475 (+) 324 WP_016853504.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37538.56 Da        Isoelectric Point: 4.7542

>NTDB_id=393768 FIU88_RS14760 WP_016853507.1 3183344..3184402(-) (recA) [Halomonas sp. THAF12]
MAQDDNRSKALNAALSQIERQFGKGTVMRLGDTPRVVMPSVSTGSLGLDIALGIGGLPYGRVVEIFGPESSGKTTLTLSV
IAQAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVSPPFRQAEFQILYGKGIYHAGEVVDLGVQCGLVDKAGAWYSYQGSKIGQGKANAAQFLEDNPAIMEEI
ESQIRAQLLSTPEPKEEDAEAEASTDAGGESS

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=393768 FIU88_RS14760 WP_016853507.1 3183344..3184402(-) (recA) [Halomonas sp. THAF12]
ATGGCTCAGGACGACAATCGTTCCAAGGCGCTCAACGCCGCGCTTTCCCAGATCGAGCGCCAGTTCGGCAAGGGCACCGT
GATGCGCCTGGGCGATACCCCGCGCGTGGTGATGCCGTCGGTGTCCACCGGTTCTTTGGGGCTGGACATCGCCCTGGGCA
TCGGTGGCCTGCCCTATGGCCGCGTGGTCGAGATCTTCGGCCCGGAATCCTCGGGCAAGACCACCCTGACCCTGTCGGTG
ATCGCCCAGGCCCAGAAGCAGGGCAAGACCTGCGCCTTCATCGACGCCGAGCACGCCCTGGACCCGAGCTACGCCGAGAA
GCTCGGCGTCAACCTCGACGACCTGCTGGTCTCCCAGCCGGACACCGGTGAGCAGGCCCTCGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGCGTCGACGTGATCATCATCGACTCGGTGGCGGCGCTGACCCCGCGCGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGCA
ACGCGCTCAAGTTCTACTCCAGCGTGCGCCTCGACATCCGCCGCACCGGCTCGGTCAAGCAGGGCGACGAGGTCACCGGC
AACGAGACCCGCGTCAAGGTGGTCAAGAACAAGGTCTCGCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAA
GGGCATCTACCACGCCGGCGAGGTGGTCGACCTGGGCGTGCAGTGCGGCCTGGTCGACAAGGCCGGCGCCTGGTACAGCT
ACCAGGGCAGCAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCGATCATGGAAGAGATC
GAGAGCCAGATCCGCGCCCAGCTGCTGTCCACGCCGGAGCCCAAGGAAGAGGACGCCGAGGCCGAGGCGAGCACCGACGC
GGGCGGCGAGTCGTCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HFV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.36

97.727

0.776
  recA Acinetobacter baylyi ADP1

76.758

92.898

0.713
  recA Acinetobacter baumannii D1279779

75.61

93.182

0.705
  recA Vibrio cholerae strain A1552

69.388

97.443

0.676
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.388

97.443

0.676
  recA Glaesserella parasuis strain SC1401

71.646

93.182

0.668
  recA Neisseria gonorrhoeae MS11

70.898

91.761

0.651
  recA Neisseria gonorrhoeae MS11

70.898

91.761

0.651
  recA Neisseria gonorrhoeae strain FA1090

70.898

91.761

0.651
  recA Ralstonia pseudosolanacearum GMI1000

71.111

89.489

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

92.614

0.582
  recA Helicobacter pylori 26695

61.078

94.886

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

94.034

0.577
  recA Helicobacter pylori strain NCTC11637

60.479

94.886

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

90.909

0.571
  recA Streptococcus mutans UA159

57.471

98.864

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

58.16

95.739

0.557
  recA Streptococcus pneumoniae Rx1

56.471

96.591

0.545
  recA Streptococcus pneumoniae TIGR4

56.471

96.591

0.545
  recA Streptococcus pneumoniae R6

56.471

96.591

0.545
  recA Streptococcus pneumoniae D39

56.471

96.591

0.545
  recA Streptococcus mitis NCTC 12261

58.589

92.614

0.543
  recA Streptococcus pyogenes NZ131

57.927

93.182

0.54
  recA Streptococcus mitis SK321

58.282

92.614

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.585

91.761

0.528
  recA Lactococcus lactis subsp. cremoris KW2

55.864

92.045

0.514

Multiple sequence alignment