Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FIU90_RS11585 Genome accession   NZ_CP045392
Coordinates   2396366..2397421 (-) Length   351 a.a.
NCBI ID   WP_152434908.1    Uniprot ID   -
Organism   Erythrobacter sp. THAF29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2391366..2402421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU90_RS11570 (FIU90_11665) - 2391434..2393203 (+) 1770 WP_152434905.1 cation:proton antiporter -
  FIU90_RS11575 (FIU90_11670) - 2393266..2393460 (+) 195 WP_152434906.1 hypothetical protein -
  FIU90_RS11580 (FIU90_11675) alaS 2393478..2396132 (-) 2655 WP_152434907.1 alanine--tRNA ligase -
  FIU90_RS11585 (FIU90_11680) recA 2396366..2397421 (-) 1056 WP_152434908.1 recombinase RecA Machinery gene
  FIU90_RS11590 (FIU90_11685) - 2397554..2399185 (-) 1632 WP_152434909.1 DUF4139 domain-containing protein -
  FIU90_RS11595 (FIU90_11690) - 2399205..2400710 (-) 1506 WP_234029505.1 DUF4139 domain-containing protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37827.30 Da        Isoelectric Point: 5.0864

>NTDB_id=393750 FIU90_RS11585 WP_152434908.1 2396366..2397421(-) (recA) [Erythrobacter sp. THAF29]
MATNLKLVEKEKDVDRQKALDAALAQIDRAFGKGSAMRLGSKEAMEVEAISTGSLGLDIALGIGGLPKGRVIEVYGPESS
GKTTLALHCIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEVIGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWYSYDSVRIGQGRENAKVYLK
ENPEVCDRLEAAIRGRTDEVAEEMMTGPDAD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=393750 FIU90_RS11585 WP_152434908.1 2396366..2397421(-) (recA) [Erythrobacter sp. THAF29]
ATGGCAACCAATCTCAAGCTGGTAGAGAAGGAAAAAGACGTGGACCGTCAAAAGGCGCTGGACGCTGCGCTTGCTCAAAT
TGATCGTGCTTTCGGCAAGGGTTCGGCGATGAGGCTGGGCTCGAAAGAAGCAATGGAAGTCGAAGCGATTTCGACCGGGT
CGCTCGGACTCGATATCGCACTCGGAATTGGCGGCCTGCCGAAAGGCCGCGTCATCGAAGTTTACGGGCCGGAAAGCTCG
GGCAAGACTACGCTGGCGCTGCACTGCATCGCAGAGGCGCAGAAGGCAGGCGGTACTGCGGCCTTCGTCGATGCCGAGCA
TGCGCTCGATCCCGTCTACGCCAAGAAACTGGGCGTGGACATTGATGAACTGATCGTCTCGCAGCCCGATACGGGCGAAC
AGGCACTCGAAATTACCGACACTCTCGTGCGCTCCAACGCGATTGATGTGTTGGTGGTCGACTCGGTCGCGGCGCTAGTC
CCCCGCGCCGAAATCGAAGGCGAAATGGGCGATTCCCATGTCGGCCTTCAGGCGCGGCTCATGTCCCAATCGCTGCGCAA
ACTGACCGGGTCGATCAACCGTTCGAAATGCATGGTGATCTTCATCAACCAGCTGCGGATGAAGATCGGCGTGATGTACG
GCAATCCCGAGACGACGACGGGCGGCAATGCGCTCAAGTTCTATGCCTCGGTCCGTCTCGACATTCGCCGCACCGGCCAG
ATCAAGGACCGCGATGAGGTGATCGGCAACTCGACCCGTGTAAAAGTGGTCAAGAACAAGGTAGCCCCTCCGTTCAAGCA
GGTCGAATTCGATATTATGTACGGCGAGGGAATTTCGAAGATCGGCGAGATCCTCGATCTCGGGGTCAAGGCCGGGATCG
TCGAGAAATCGGGCAGCTGGTATTCTTATGACAGCGTCCGGATCGGTCAGGGCCGTGAGAACGCCAAGGTCTATCTGAAG
GAAAACCCTGAAGTTTGCGACCGGTTGGAAGCCGCTATTCGCGGCCGCACCGACGAGGTTGCCGAGGAAATGATGACAGG
CCCGGACGCGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

68.546

96.011

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.546

96.011

0.658
  recA Pseudomonas stutzeri DSM 10701

70.679

92.308

0.652
  recA Glaesserella parasuis strain SC1401

68.373

94.587

0.647
  recA Neisseria gonorrhoeae MS11

70.093

91.453

0.641
  recA Neisseria gonorrhoeae MS11

70.093

91.453

0.641
  recA Neisseria gonorrhoeae strain FA1090

70.093

91.453

0.641
  recA Acinetobacter baylyi ADP1

69.255

91.738

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

69.062

91.168

0.63
  recA Acinetobacter baumannii D1279779

68.323

91.738

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.412

96.866

0.624
  recA Helicobacter pylori strain NCTC11637

64.497

96.296

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.871

92.877

0.621
  recA Helicobacter pylori 26695

64.201

96.296

0.618
  recA Latilactobacillus sakei subsp. sakei 23K

63.314

96.296

0.61
  recA Ralstonia pseudosolanacearum GMI1000

68.831

87.749

0.604
  recA Streptococcus pneumoniae Rx1

62.202

95.726

0.595
  recA Streptococcus pneumoniae D39

62.202

95.726

0.595
  recA Streptococcus pneumoniae R6

62.202

95.726

0.595
  recA Streptococcus pneumoniae TIGR4

62.202

95.726

0.595
  recA Streptococcus mitis NCTC 12261

62.275

95.157

0.593
  recA Streptococcus mitis SK321

62.275

95.157

0.593
  recA Streptococcus pyogenes NZ131

62.654

92.308

0.578
  recA Lactococcus lactis subsp. cremoris KW2

60.119

95.726

0.575
  recA Streptococcus mutans UA159

62.037

92.308

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

92.593

0.57

Multiple sequence alignment