Detailed information NTG0393729

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: FIU93_RS16220
• Genome accession: NZ_CP045380
• Coordinates: 3547979..3549049 (+)
• Length: 356 a.a.
• NCBI ID: WP_031269221.1
• Uniprot ID: A0A0M6Y212
• Organism: Labrenzia sp. THAF35
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3542979..3554049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU93_RS16205 (FIU93_16390)	-	3543167..3545593 (+)	2427	WP_055655149.1	DUF3772 domain-containing protein	-
FIU93_RS16210 (FIU93_16395)	-	3545678..3546610 (-)	933	WP_152506164.1	pseudouridine-5'-phosphate glycosidase	-
FIU93_RS16215 (FIU93_16400)	-	3546716..3547639 (-)	924	WP_209010144.1	PfkB family carbohydrate kinase	-
FIU93_RS16220 (FIU93_16405)	recA	3547979..3549049 (+)	1071	WP_031269221.1	recombinase RecA	Machinery gene
FIU93_RS16225 (FIU93_16410)	alaS	3549403..3552060 (+)	2658	WP_152506166.1	alanine--tRNA ligase	-
FIU93_RS31710 (FIU93_16415)	-	3552604..3552729 (-)	126	WP_023000808.1	hypothetical protein	-

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38042.56 Da
• Isoelectric Point: 4.8582

>NTDB_id=393729 FIU93_RS16220 WP_031269221.1 3547979..3549049(+) (recA) [Labrenzia sp. THAF35]
MSQSTLRLVESSQMDKTKALDAALSQIERAFGKGSIMKMGQGQVVEVQAVSTGSLGLDIALGIGGLPRGRIVEIYGPESS
GKTTLALHAVAEAQKTGGICAFVDAEHALDPIYARKLGVDIDNLLISQPDAGEQALEIADTLVRSGAIDVLVIDSVAALT
PKAELEGEMGDSLPGMQARLMSQALRKLTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA
IKDRDEVVGNQTRVKVVKNKLAPPFRQVEFDIVYGEGVSKTGELIDLGVKGNIVEKSGAWFSYNSQRLGQGRENAKQFLK
DNPEIADEIELAIRQNAGLIADAIIDPDAASEEAED

Nucleotide

• Length: 1071 bp

>NTDB_id=393729 FIU93_RS16220 WP_031269221.1 3547979..3549049(+) (recA) [Labrenzia sp. THAF35]
ATGTCGCAAAGTACACTTCGTCTCGTAGAAAGCAGCCAGATGGATAAGACAAAAGCGCTGGACGCAGCGCTCAGCCAAAT
CGAACGCGCCTTCGGCAAAGGCTCCATCATGAAGATGGGTCAGGGCCAGGTGGTTGAGGTGCAAGCCGTCTCGACCGGGT
CGCTCGGACTTGATATCGCGCTCGGGATCGGCGGTCTGCCGCGCGGCCGTATCGTCGAGATCTACGGGCCGGAGTCTTCG
GGTAAAACCACGCTTGCCCTGCATGCGGTTGCCGAAGCCCAGAAGACCGGTGGTATCTGCGCCTTTGTCGATGCGGAGCA
CGCGCTGGATCCGATCTATGCGCGCAAGCTTGGCGTCGATATTGACAATCTGCTGATCTCCCAGCCGGACGCCGGTGAAC
AGGCGCTGGAAATTGCCGACACGCTGGTGCGCTCCGGCGCCATCGATGTTCTGGTCATCGACTCGGTCGCCGCGCTGACG
CCGAAGGCTGAACTCGAAGGCGAGATGGGCGACAGCCTGCCGGGCATGCAGGCCCGTCTGATGAGCCAGGCTCTTCGCAA
ACTGACCGCGTCGATTTCCAAGTCGAAGTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCG
GTTCTCCGGAAACCACGACCGGCGGTAACGCGCTCAAGTTCTATGCTTCTGTCCGCCTCGATATCCGCCGTATCGGTGCG
ATCAAGGACCGGGACGAAGTCGTCGGCAACCAGACCCGCGTGAAAGTCGTCAAGAACAAGCTTGCGCCTCCTTTCCGTCA
GGTGGAATTCGACATCGTCTATGGTGAAGGTGTCTCCAAGACCGGCGAACTCATCGACCTTGGCGTCAAGGGCAACATCG
TTGAAAAGTCGGGTGCCTGGTTCTCCTACAACAGCCAGCGTCTTGGCCAGGGCCGGGAAAACGCCAAGCAGTTTCTGAAG
GATAATCCGGAAATTGCCGATGAAATCGAACTGGCGATCCGCCAGAACGCCGGCCTGATCGCCGATGCGATCATTGATCC
GGACGCTGCATCGGAAGAAGCAGAGGACTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (18-279)

3D structure

• AlphaFold DB: A0A0M6Y212

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Acinetobacter baylyi ADP1	69.591	96.067	0.669
recA	Ralstonia pseudosolanacearum GMI1000	74.441	87.921	0.654
recA	Neisseria gonorrhoeae MS11	72.274	90.169	0.652
recA	Neisseria gonorrhoeae strain FA1090	72.274	90.169	0.652
recA	Neisseria gonorrhoeae MS11	72.274	90.169	0.652
recA	Glaesserella parasuis strain SC1401	64.972	99.438	0.646
recA	Acinetobacter baumannii D1279779	70.717	90.169	0.638
recA	Pseudomonas stutzeri DSM 10701	70	89.888	0.629
recA	Vibrio cholerae strain A1552	68.847	90.169	0.621
recA	Vibrio cholerae O1 biovar El Tor strain E7946	68.847	90.169	0.621
recA	Helicobacter pylori strain NCTC11637	63.743	96.067	0.612
recA	Bacillus subtilis subsp. subtilis str. 168	65.559	92.978	0.61
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	65.559	92.978	0.61
recA	Helicobacter pylori 26695	63.158	96.067	0.607
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.951	91.573	0.604
recA	Streptococcus mitis SK321	58.402	100	0.596
recA	Streptococcus mitis NCTC 12261	60.519	97.472	0.59
recA	Streptococcus pneumoniae TIGR4	59.942	97.472	0.584
recA	Streptococcus pneumoniae R6	59.942	97.472	0.584
recA	Streptococcus pneumoniae D39	59.942	97.472	0.584
recA	Streptococcus pneumoniae Rx1	59.942	97.472	0.584
recA	Streptococcus mutans UA159	59.71	96.91	0.579
recA	Latilactobacillus sakei subsp. sakei 23K	63.077	91.292	0.576
recA	Streptococcus pyogenes NZ131	60.976	92.135	0.562
recA	Lactococcus lactis subsp. cremoris KW2	60.06	93.539	0.562
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	63.291	88.764	0.562