Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FIU94_RS13730 Genome accession   NZ_CP045372
Coordinates   2806796..2807866 (+) Length   356 a.a.
NCBI ID   WP_152466322.1    Uniprot ID   A0A5P9FA02
Organism   Sulfitobacter sp. THAF37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2801796..2812866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU94_RS13715 (FIU94_13830) - 2802061..2803221 (+) 1161 WP_152466320.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FIU94_RS13720 (FIU94_13835) - 2803492..2805681 (+) 2190 WP_152467062.1 ATP-binding protein -
  FIU94_RS13725 (FIU94_13840) - 2806002..2806595 (-) 594 WP_152466321.1 gamma-glutamyl kinase -
  FIU94_RS13730 (FIU94_13845) recA 2806796..2807866 (+) 1071 WP_152466322.1 recombinase RecA Machinery gene
  FIU94_RS13735 (FIU94_13850) alaS 2808008..2810665 (+) 2658 WP_152466323.1 alanine--tRNA ligase -
  FIU94_RS13740 (FIU94_13855) - 2810670..2810957 (+) 288 WP_152466324.1 DUF1330 domain-containing protein -
  FIU94_RS13745 (FIU94_13860) typA 2811037..2812854 (-) 1818 WP_152466325.1 translational GTPase TypA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38040.46 Da        Isoelectric Point: 4.8683

>NTDB_id=393724 FIU94_RS13730 WP_152466322.1 2806796..2807866(+) (recA) [Sulfitobacter sp. THAF37]
MATADLLTMDNKKSAEKQKALDSALAQIERQFGKGSIMKLGAEGAIQDIKASSTGSLGLDIALGIGGLPMGRIIEIYGPE
SSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYARKLGVDIDELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAA
LTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRI
GALKDRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDERIGQGRENAKTF
LKDNGAMAMEIEDKIRAAHGLDFNGTEDNDGDILEA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=393724 FIU94_RS13730 WP_152466322.1 2806796..2807866(+) (recA) [Sulfitobacter sp. THAF37]
ATGGCAACGGCAGATTTATTGACAATGGACAATAAGAAATCAGCGGAAAAGCAAAAGGCGCTGGACAGCGCACTTGCGCA
GATCGAACGGCAGTTCGGCAAGGGCTCCATCATGAAGCTCGGTGCCGAAGGGGCGATCCAGGACATCAAGGCGAGTTCCA
CAGGGTCGCTGGGGCTGGACATCGCCCTGGGCATCGGCGGCCTGCCGATGGGCCGCATCATCGAGATCTACGGCCCCGAA
TCCTCGGGCAAGACCACGCTGACCCTGCATTGCGTGGCCGAACAGCAAAAGGCCGGCGGCGTCTGCGCCTTCGTCGATGC
GGAACACGCACTCGATCCGCAATACGCCCGCAAGCTGGGCGTCGACATCGACGAGCTGCTGATCTCGCAGCCCGACACCG
GCGAACAGGCGCTGGAAATCACCGACACGCTCGTGCGCTCGGGGGCGGTCAACATGGTGATCGTCGACTCGGTCGCGGCG
CTCACGCCGAAGTCCGAGCTTGAGGGCGATATGGGCGACAGCTCCGTCGGGGTGCAGGCCCGTCTGATGAGTCAGGCGAT
GCGCAAGCTGACCGGCTCCATCAGTCGCTCCAACTGCATGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCA
TGTTCGGCTCTCCCGAGACGACGACCGGCGGTAACGCGCTCAAGTTCTATTCGTCCGTCCGGCTGGACATCCGCCGCATC
GGCGCGCTGAAGGACCGCGACGAGGTGGTCGGCAACGCAACCCGCGTGAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTT
CAAGCAGGTGGAATTCGACATCATGTACGGCGAAGGCATCTCCAAGATGGGCGAACTGCTGGATCTCGGTGTCAAGGCCG
GTGTGGTCGAGAAGTCCGGTTCGTGGTTCTCCTATGGCGACGAACGGATCGGCCAGGGCCGCGAAAACGCCAAGACCTTC
CTCAAGGACAATGGCGCGATGGCGATGGAGATCGAAGACAAGATCCGCGCGGCGCATGGGCTGGATTTCAACGGCACCGA
AGACAACGACGGCGACATTCTGGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9FA02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.341

92.135

0.657
  recA Neisseria gonorrhoeae strain FA1090

68.563

93.82

0.643
  recA Neisseria gonorrhoeae MS11

68.563

93.82

0.643
  recA Neisseria gonorrhoeae MS11

68.563

93.82

0.643
  recA Glaesserella parasuis strain SC1401

71.028

90.169

0.64
  recA Pseudomonas stutzeri DSM 10701

70.093

90.169

0.632
  recA Acinetobacter baumannii D1279779

68.293

92.135

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

67.169

93.258

0.626
  recA Acinetobacter baylyi ADP1

67.683

92.135

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.375

89.888

0.624
  recA Vibrio cholerae strain A1552

69.375

89.888

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.012

95.225

0.61
  recA Helicobacter pylori strain NCTC11637

65.644

91.573

0.601
  recA Helicobacter pylori 26695

65.031

91.573

0.596
  recA Lactococcus lactis subsp. cremoris KW2

60.571

98.315

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.417

91.573

0.59
  recA Streptococcus pneumoniae TIGR4

59.544

98.596

0.587
  recA Streptococcus pneumoniae Rx1

59.544

98.596

0.587
  recA Streptococcus pneumoniae D39

59.544

98.596

0.587
  recA Streptococcus pneumoniae R6

59.544

98.596

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

60.29

96.91

0.584
  recA Streptococcus mitis SK321

61.128

94.663

0.579
  recA Streptococcus mitis NCTC 12261

61.128

94.663

0.579
  recA Streptococcus mutans UA159

60.303

92.697

0.559
  recA Streptococcus pyogenes NZ131

60.486

92.416

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

91.011

0.556

Multiple sequence alignment