Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FIU95_RS05760 Genome accession   NZ_CP045369
Coordinates   1359998..1361032 (+) Length   344 a.a.
NCBI ID   WP_152452354.1    Uniprot ID   A0A5P9EU66
Organism   Microbulbifer sp. THAF38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1354998..1366032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU95_RS05745 (FIU95_05935) - 1354998..1355432 (+) 435 WP_152452348.1 GNAT family N-acetyltransferase -
  FIU95_RS21675 - 1355752..1355928 (-) 177 WP_371416963.1 hypothetical protein -
  FIU95_RS21095 - 1355940..1356104 (-) 165 WP_172975329.1 hypothetical protein -
  FIU95_RS05750 (FIU95_05940) - 1356654..1358669 (-) 2016 WP_152452350.1 family 16 glycosylhydrolase -
  FIU95_RS05755 (FIU95_05945) - 1359283..1359798 (+) 516 WP_152452352.1 CinA family protein -
  FIU95_RS05760 (FIU95_05950) recA 1359998..1361032 (+) 1035 WP_152452354.1 recombinase RecA Machinery gene
  FIU95_RS05765 (FIU95_05955) - 1361033..1361521 (+) 489 WP_152452356.1 regulatory protein RecX -
  FIU95_RS05770 (FIU95_05960) glpK 1361621..1363099 (+) 1479 WP_152452358.1 glycerol kinase GlpK -
  FIU95_RS05775 (FIU95_05965) - 1363146..1364165 (+) 1020 WP_152452360.1 class I fructose-bisphosphate aldolase -
  FIU95_RS05780 (FIU95_05970) - 1364210..1365049 (+) 840 WP_152452362.1 alpha/beta hydrolase -
  FIU95_RS05785 (FIU95_05975) - 1365182..1365367 (+) 186 WP_152452364.1 Trm112 family protein -
  FIU95_RS05790 (FIU95_05980) - 1365372..1365719 (+) 348 WP_152452366.1 histidine triad nucleotide-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37040.41 Da        Isoelectric Point: 5.1798

>NTDB_id=393705 FIU95_RS05760 WP_152452354.1 1359998..1361032(+) (recA) [Microbulbifer sp. THAF38]
MDSNKDKALKAALSQIERQFGKGTVMRMGDKERERIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLAIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGEGINMIGEIVDYGVKLGLVDKAGAWYSYKGDKIGQGKANATKFLRENPDIRNEIEG
QLRAQLLGDLVPASPAEAVELPEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=393705 FIU95_RS05760 WP_152452354.1 1359998..1361032(+) (recA) [Microbulbifer sp. THAF38]
ATGGATTCCAATAAAGACAAGGCATTGAAGGCGGCGCTGTCGCAGATCGAACGCCAGTTTGGCAAGGGCACAGTGATGCG
CATGGGGGATAAAGAGCGCGAGCGCATCCCCGCAATCTCTACTGGCTCCCTCGGCCTGGATGTGGCGCTCGGTATAGGCG
GCCTGCCACGCGGTCGTATCGTCGAGATCTATGGCCCGGAGTCCTCTGGTAAAACCACCCTGACCCTACAAGTGATTGCC
GAGGCTCAGCGCAAAGGCGGCACCTGTGCTTTCGTTGATGCGGAGCATGCCCTGGATCCGATTTATGCCGAGAAGCTGGG
CGTAAATGTGGATGAGCTAATCGTCTCCCAGCCCGATACCGGTGAGCAGGCCCTGGAAGTGGCGGATATGCTGGTGCGCT
CCGGTGCTGTAGATGTATTGGTTGTGGACTCTGTAGCGGCCTTGACCCCGCGCGCTGAGATTGAGGGTGAGATGGGTGAT
TCCCATGTTGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGCTGACGGGCAATATTAAGAACACCAACACCCT
GGCGATCTTTATTAACCAGATTCGTATGAAGATCGGTGTGATGTTTGGTTCTCCGGAGACCACCACTGGCGGTAATGCCC
TCAAGTTTTACTCTTCTGTGCGCCTGGACATCCGTCGTATCGGCTCGGTGAAGGATGGCGATGAAGTGGTGGGTAACGAG
ACCCGTGTGAAGGTGGTGAAGAACAAGGTGGCTCCACCCTTCAAGCAGACCGAATTCCAGATTATGTACGGCGAAGGCAT
CAATATGATTGGTGAAATCGTCGATTATGGTGTGAAGTTGGGCTTGGTTGACAAGGCTGGCGCCTGGTATAGCTACAAGG
GCGACAAGATTGGTCAGGGCAAGGCTAATGCCACCAAGTTCCTGCGTGAAAACCCTGATATCCGCAACGAGATTGAAGGC
CAGCTGCGCGCTCAACTGTTAGGTGACCTAGTGCCGGCCAGCCCCGCAGAAGCTGTGGAACTGCCGGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9EU66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.734

95.058

0.767
  recA Acinetobacter baylyi ADP1

74.312

95.058

0.706
  recA Acinetobacter baumannii D1279779

74.006

95.058

0.703
  recA Vibrio cholerae strain A1552

73.394

95.058

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

95.058

0.698
  recA Ralstonia pseudosolanacearum GMI1000

71.429

95.64

0.683
  recA Neisseria gonorrhoeae MS11

72.308

94.477

0.683
  recA Neisseria gonorrhoeae MS11

72.308

94.477

0.683
  recA Neisseria gonorrhoeae strain FA1090

72.308

94.477

0.683
  recA Glaesserella parasuis strain SC1401

71.429

93.605

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.025

92.733

0.631
  recA Helicobacter pylori strain NCTC11637

61.739

100

0.619
  recA Helicobacter pylori 26695

61.739

100

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

66.044

93.314

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

96.221

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

62.813

93.023

0.584
  recA Streptococcus mutans UA159

61.846

94.477

0.584
  recA Streptococcus pneumoniae TIGR4

60.976

95.349

0.581
  recA Streptococcus pneumoniae D39

60.976

95.349

0.581
  recA Streptococcus mitis NCTC 12261

60.976

95.349

0.581
  recA Streptococcus pneumoniae Rx1

60.976

95.349

0.581
  recA Streptococcus pneumoniae R6

60.976

95.349

0.581
  recA Streptococcus mitis SK321

60.671

95.349

0.578
  recA Streptococcus pyogenes NZ131

60.185

94.186

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

93.895

0.561
  recA Lactococcus lactis subsp. cremoris KW2

58.232

95.349

0.555

Multiple sequence alignment