Detailed information NTG0393646

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: FIU98_RS16295
• Genome accession: NZ_CP045359
• Coordinates: 3515085..3516128 (-)
• Length: 347 a.a.
• NCBI ID: WP_037053238.1
• Uniprot ID: A0A5P9CC95
• Organism: Pseudomonas sp. THAF42
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3511947..3523733	3515085..3516128	within	0

Gene organization within MGE regions

Location: 3511947..3523733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU98_RS16270 (FIU98_16205)	rmf	3511947..3512162 (+)	216	WP_080756998.1	ribosome modulation factor	-
FIU98_RS16275 (FIU98_16210)	-	3512243..3513265 (-)	1023	WP_037053235.1	quinone-dependent dihydroorotate dehydrogenase	-
FIU98_RS16280 (FIU98_16215)	-	3513353..3513574 (-)	222	WP_080756997.1	DUF2835 domain-containing protein	-
FIU98_RS16285 (FIU98_16220)	-	3513719..3514597 (+)	879	WP_152489199.1	DUF6685 family protein	-
FIU98_RS16290 (FIU98_16225)	recX	3514608..3515069 (-)	462	WP_152489200.1	recombination regulator RecX	-
FIU98_RS16295 (FIU98_16230)	recA	3515085..3516128 (-)	1044	WP_037053238.1	recombinase RecA	Machinery gene
FIU98_RS16300 (FIU98_16235)	-	3516214..3516714 (-)	501	WP_152489201.1	CinA family protein	-
FIU98_RS25115 (FIU98_16240)	-	3516825..3518129 (+)	1305	WP_152489202.1	PAS domain-containing methyl-accepting chemotaxis protein	-
FIU98_RS16310 (FIU98_16245)	mutS	3518221..3520788 (+)	2568	WP_152489203.1	DNA mismatch repair protein MutS	-
FIU98_RS16315 (FIU98_16250)	fdxA	3520928..3521251 (+)	324	WP_037053831.1	ferredoxin FdxA	-
FIU98_RS16320 (FIU98_16260)	rpoS	3521755..3522762 (-)	1008	WP_037053828.1	RNA polymerase sigma factor RpoS	-
FIU98_RS16325 (FIU98_16265)	-	3522864..3523694 (-)	831	WP_152489204.1	peptidoglycan DD-metalloendopeptidase family protein	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37157.56 Da
• Isoelectric Point: 5.5372

>NTDB_id=393646 FIU98_RS16295 WP_037053238.1 3515085..3516128(-) (recA) [Pseudomonas sp. THAF42]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGKANAAKYLEDNQAVAREIEG
QIRQKLLVSSTPAKATADDLADAEVDF

Nucleotide

• Length: 1044 bp

>NTDB_id=393646 FIU98_RS16295 WP_037053238.1 3515085..3516128(-) (recA) [Pseudomonas sp. THAF42]
ATGGACGAGAACAAGAAGCGTGCCTTGGCGGCTGCCCTGGGCCAGATCGAGAAGCAGTTTGGCAAGGGCGCGGTCATGCG
CATGGGCGATCACGAGCGTCAGGCGATTCCGGCCATTTCCACCGGATCGCTGGGGCTGGACATCGCGCTGGGCATCGGCG
GCCTGCCCAAGGGCCGCATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACGCTCACGCTGTCGGTGATCGCC
GAAGCGCAGAAGCTCGGTGCCACCTGTGCCTTCGTCGATGCCGAGCACGCGCTGGACCCGGATTACGCCGGCAAGCTGGG
TGTCAACGTCGACGACCTGCTGGTCTCCCAGCCCGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCATCGTCGACTCCGTTGCGGCCCTGGTGCCGAAGGCGGAAATCGAGGGTGAGATGGGTGAC
ATGCACGTCGGCCTGCAGGCTCGTCTGATGAGCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAATGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTCATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACTCCTCGGTTCGCCTGGACATCCGTCGTACGGGTGCGGTGAAAGAGGGTGAAGAGGTGGTCGGTAGCGAA
ACGCGGGTGAAGATCGTCAAGAACAAGGTCGCTCCGCCTTTCCGTCAGGCCGAGTTCCAGATCCTCTATGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTCGGTGTGCAGCAGGGTCTGGTCGAGAAGTCGGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAATGCCGCCAAGTACCTGGAAGACAATCAGGCCGTGGCACGCGAGATCGAAGGT
CAGATTCGCCAGAAGCTGCTGGTCAGCAGCACGCCGGCGAAGGCGACTGCCGATGACCTGGCTGACGCAGAAGTCGACTT
CTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A5P9CC95

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	91.066	100	0.911
recA	Acinetobacter baylyi ADP1	74.631	97.695	0.729
recA	Acinetobacter baumannii D1279779	74.631	97.695	0.729
recA	Glaesserella parasuis strain SC1401	70.554	98.847	0.697
recA	Vibrio cholerae O1 biovar El Tor strain E7946	74.006	94.236	0.697
recA	Vibrio cholerae strain A1552	74.006	94.236	0.697
recA	Ralstonia pseudosolanacearum GMI1000	71.56	94.236	0.674
recA	Neisseria gonorrhoeae MS11	71.605	93.372	0.669
recA	Neisseria gonorrhoeae MS11	71.605	93.372	0.669
recA	Neisseria gonorrhoeae strain FA1090	71.605	93.372	0.669
recA	Helicobacter pylori strain NCTC11637	64.22	94.236	0.605
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.914	94.236	0.602
recA	Helicobacter pylori 26695	63.609	94.236	0.599
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.377	96.254	0.591
recA	Bacillus subtilis subsp. subtilis str. 168	62.305	92.507	0.576
recA	Latilactobacillus sakei subsp. sakei 23K	59.091	95.101	0.562
recA	Streptococcus mitis SK321	55.977	98.847	0.553
recA	Streptococcus mutans UA159	58.462	93.66	0.548
recA	Streptococcus pyogenes NZ131	57.317	94.524	0.542
recA	Streptococcus mitis NCTC 12261	57.895	93.084	0.539
recA	Streptococcus pneumoniae Rx1	57.362	93.948	0.539
recA	Streptococcus pneumoniae D39	57.362	93.948	0.539
recA	Streptococcus pneumoniae R6	57.362	93.948	0.539
recA	Streptococcus pneumoniae TIGR4	57.362	93.948	0.539
recA	Lactococcus lactis subsp. cremoris KW2	56.966	93.084	0.53
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	55.183	94.524	0.522