Detailed information NTG0393587

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: FIV00_RS12310
• Genome accession: NZ_CP045354
• Coordinates: 2621418..2622488 (+)
• Length: 356 a.a.
• NCBI ID: WP_152501020.1
• Uniprot ID: -
• Organism: Labrenzia sp. THAF82
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2616418..2627488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIV00_RS12295 (FIV00_12575)	-	2616624..2619134 (+)	2511	WP_209006906.1	DUF3772 domain-containing protein	-
FIV00_RS12300 (FIV00_12580)	-	2619139..2620071 (-)	933	WP_152501018.1	pseudouridine-5'-phosphate glycosidase	-
FIV00_RS12305 (FIV00_12585)	-	2620178..2621101 (-)	924	WP_152501019.1	PfkB family carbohydrate kinase	-
FIV00_RS12310 (FIV00_12590)	recA	2621418..2622488 (+)	1071	WP_152501020.1	recombinase RecA	Machinery gene
FIV00_RS12315 (FIV00_12595)	alaS	2622807..2625464 (+)	2658	WP_152501021.1	alanine--tRNA ligase	-
FIV00_RS30430 (FIV00_12600)	-	2625551..2625676 (-)	126	WP_256366685.1	hypothetical protein	-
FIV00_RS12320 (FIV00_12605)	-	2625891..2627180 (+)	1290	WP_152501022.1	cyclic nucleotide-gated ion channel	-

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38262.68 Da
• Isoelectric Point: 4.7977

>NTDB_id=393587 FIV00_RS12310 WP_152501020.1 2621418..2622488(+) (recA) [Labrenzia sp. THAF82]
MSQSTLRLVESSQMDKTKALDAALSQIERAFGKGSIMRMGQRQAVEIQSVSTGSLGLDIALGIGGLPRGRIVEIYGPESS
GKTTLALHTVAEAQKNGGICAFVDAEHALDPVYARKLGVDIDNLLISQPDAGEQALEICDTLVRSGAIDVLVIDSVAALT
PKAELEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGA
IKDRDEVVGNQTRVKVVKNKLAPPFRQVEFDIVYGEGVSKTGELIDLGVKGNIVEKSGAWFSYNSQRLGQGRENAKQFLK
DNPEIADEIELAIRQNAGLIAEAIIDPEGGAEEDED

Nucleotide

• Length: 1071 bp

>NTDB_id=393587 FIV00_RS12310 WP_152501020.1 2621418..2622488(+) (recA) [Labrenzia sp. THAF82]
ATGTCACAAAGTACACTTCGTCTCGTAGAAAGCAGCCAGATGGATAAGACAAAAGCGCTGGATGCAGCGCTGAGCCAGAT
CGAAAGAGCCTTTGGTAAAGGCTCCATCATGCGTATGGGTCAGAGGCAAGCTGTCGAGATTCAGTCTGTCTCAACCGGGT
CGCTCGGTTTGGATATCGCGCTGGGTATTGGCGGGCTGCCGCGTGGACGTATCGTTGAGATCTATGGTCCGGAATCGTCC
GGTAAGACCACGCTTGCACTTCACACAGTTGCCGAAGCCCAGAAGAACGGCGGCATTTGTGCCTTCGTTGATGCGGAGCA
CGCGCTGGATCCTGTTTATGCCCGCAAGCTCGGTGTCGATATCGACAACCTTTTGATCTCCCAGCCAGACGCAGGTGAAC
AGGCGCTTGAGATCTGCGATACGCTTGTCCGTTCCGGGGCAATTGATGTTCTGGTCATCGACTCCGTTGCAGCTCTGACC
CCCAAGGCAGAGCTGGAAGGGGAAATGGGTGACAGTCTTCCGGGCATGCAAGCGCGCCTGATGAGCCAGGCGCTTCGCAA
GCTGACAGCATCGATTTCCAAGTCGAACTGCATGGTTATCTTCATCAACCAGATCCGGATGAAGATCGGTGTCATGTTCG
GCTCGCCCGAGACAACGACGGGCGGTAATGCATTGAAATTCTATTCCTCGGTTCGTCTTGATATCCGTCGCATCGGCGCA
ATCAAGGATCGGGACGAGGTGGTCGGAAACCAAACGCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCTCCTTTCCGGCA
GGTTGAGTTCGATATCGTTTATGGTGAAGGTGTTTCCAAAACCGGTGAACTGATCGACCTTGGTGTTAAAGGCAATATTG
TCGAAAAGTCCGGGGCCTGGTTCTCCTATAACAGTCAGCGGCTTGGCCAGGGCCGTGAAAATGCCAAACAGTTTCTGAAG
GATAATCCGGAGATTGCTGACGAGATTGAATTGGCAATTCGCCAGAATGCGGGACTTATCGCAGAAGCAATCATCGACCC
GGAAGGCGGTGCAGAAGAAGACGAGGATTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (18-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Neisseria gonorrhoeae MS11	69.855	96.91	0.677
recA	Neisseria gonorrhoeae strain FA1090	69.855	96.91	0.677
recA	Neisseria gonorrhoeae MS11	69.855	96.91	0.677
recA	Vibrio cholerae O1 biovar El Tor strain E7946	67.143	98.315	0.66
recA	Vibrio cholerae strain A1552	67.143	98.315	0.66
recA	Glaesserella parasuis strain SC1401	69.369	93.539	0.649
recA	Ralstonia pseudosolanacearum GMI1000	73.163	87.921	0.643
recA	Pseudomonas stutzeri DSM 10701	70.938	89.888	0.638
recA	Acinetobacter baylyi ADP1	70.717	90.169	0.638
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.205	96.067	0.626
recA	Acinetobacter baumannii D1279779	69.47	90.169	0.626
recA	Helicobacter pylori strain NCTC11637	64.035	96.067	0.615
recA	Helicobacter pylori 26695	64.035	96.067	0.615
recA	Bacillus subtilis subsp. subtilis str. 168	66.462	91.292	0.607
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	64.22	91.854	0.59
recA	Streptococcus mitis SK321	57.851	100	0.59
recA	Streptococcus mitis NCTC 12261	59.654	97.472	0.581
recA	Streptococcus pneumoniae R6	59.078	97.472	0.576
recA	Streptococcus pneumoniae D39	59.078	97.472	0.576
recA	Streptococcus pneumoniae TIGR4	59.078	97.472	0.576
recA	Streptococcus pneumoniae Rx1	59.078	97.472	0.576
recA	Streptococcus mutans UA159	59.42	96.91	0.576
recA	Latilactobacillus sakei subsp. sakei 23K	62.462	91.292	0.57
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.658	88.764	0.556
recA	Streptococcus pyogenes NZ131	60.061	92.135	0.553
recA	Lactococcus lactis subsp. cremoris KW2	59.091	92.697	0.548