Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FIV03_RS16645 Genome accession   NZ_CP045344
Coordinates   3626974..3628044 (+) Length   356 a.a.
NCBI ID   WP_031269221.1    Uniprot ID   A0A0M6Y212
Organism   Labrenzia sp. THAF187b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3621974..3633044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV03_RS16615 - 3622654..3622860 (+) 207 WP_152510332.1 hypothetical protein -
  FIV03_RS16620 - 3622902..3624107 (-) 1206 WP_152510333.1 hypothetical protein -
  FIV03_RS32050 - 3624356..3624517 (+) 162 WP_353622189.1 Com family DNA-binding transcriptional regulator -
  FIV03_RS16630 (FIV03_16960) - 3624484..3625191 (+) 708 WP_152510335.1 site-specific DNA-methyltransferase -
  FIV03_RS16635 (FIV03_16965) - 3625258..3625884 (+) 627 WP_152510336.1 hypothetical protein -
  FIV03_RS16640 (FIV03_16970) - 3625958..3626743 (+) 786 WP_152510337.1 hypothetical protein -
  FIV03_RS16645 (FIV03_16975) recA 3626974..3628044 (+) 1071 WP_031269221.1 recombinase RecA Machinery gene
  FIV03_RS16650 (FIV03_16980) alaS 3628398..3631055 (+) 2658 WP_152510338.1 alanine--tRNA ligase -
  FIV03_RS31885 (FIV03_16985) - 3631602..3631727 (-) 126 WP_023000808.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38042.56 Da        Isoelectric Point: 4.8582

>NTDB_id=393517 FIV03_RS16645 WP_031269221.1 3626974..3628044(+) (recA) [Labrenzia sp. THAF187b]
MSQSTLRLVESSQMDKTKALDAALSQIERAFGKGSIMKMGQGQVVEVQAVSTGSLGLDIALGIGGLPRGRIVEIYGPESS
GKTTLALHAVAEAQKTGGICAFVDAEHALDPIYARKLGVDIDNLLISQPDAGEQALEIADTLVRSGAIDVLVIDSVAALT
PKAELEGEMGDSLPGMQARLMSQALRKLTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA
IKDRDEVVGNQTRVKVVKNKLAPPFRQVEFDIVYGEGVSKTGELIDLGVKGNIVEKSGAWFSYNSQRLGQGRENAKQFLK
DNPEIADEIELAIRQNAGLIADAIIDPDAASEEAED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=393517 FIV03_RS16645 WP_031269221.1 3626974..3628044(+) (recA) [Labrenzia sp. THAF187b]
ATGTCGCAAAGTACACTTCGTCTCGTAGAAAGCAGCCAGATGGATAAGACAAAAGCGCTGGACGCAGCGCTCAGCCAAAT
CGAACGCGCCTTCGGCAAAGGTTCCATCATGAAGATGGGGCAGGGCCAGGTGGTTGAGGTGCAAGCCGTCTCGACCGGGT
CGCTCGGACTTGATATCGCGCTTGGGATCGGCGGTCTGCCGCGCGGCCGTATCGTCGAGATCTACGGGCCTGAGTCTTCG
GGTAAAACCACGCTTGCCCTGCATGCGGTTGCCGAAGCCCAGAAGACCGGTGGTATCTGCGCCTTTGTCGATGCGGAGCA
CGCGCTGGATCCGATCTATGCACGCAAGCTTGGCGTCGATATCGACAATCTGCTGATCTCCCAGCCGGACGCTGGTGAAC
AGGCACTTGAAATTGCCGACACGCTGGTGCGGTCCGGCGCCATCGATGTTCTGGTCATCGACTCGGTCGCCGCGCTGACG
CCGAAGGCAGAACTCGAAGGCGAGATGGGCGACAGCCTGCCGGGCATGCAGGCCCGTCTGATGAGCCAGGCTCTTCGCAA
GCTGACTGCTTCGATTTCCAAGTCGAAGTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTTG
GTTCTCCGGAAACCACGACCGGCGGTAACGCGCTCAAGTTCTATGCCTCCGTCCGTTTGGATATCCGCCGTATCGGTGCG
ATCAAGGACCGGGACGAAGTGGTCGGCAACCAGACCCGCGTGAAAGTCGTCAAGAACAAGCTTGCGCCTCCTTTCCGTCA
GGTGGAATTCGACATCGTCTATGGTGAAGGTGTCTCCAAGACCGGCGAACTCATTGACCTCGGCGTCAAGGGCAACATCG
TTGAAAAGTCGGGTGCCTGGTTCTCCTACAACAGCCAGCGTCTTGGCCAGGGCCGGGAAAACGCCAAGCAGTTTCTGAAG
GACAATCCGGAAATTGCCGATGAAATCGAACTTGCGATCCGCCAGAACGCCGGCCTGATCGCCGATGCGATCATTGATCC
GGACGCTGCATCGGAAGAAGCCGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M6Y212

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.591

96.067

0.669
  recA Ralstonia pseudosolanacearum GMI1000

74.441

87.921

0.654
  recA Neisseria gonorrhoeae MS11

72.274

90.169

0.652
  recA Neisseria gonorrhoeae strain FA1090

72.274

90.169

0.652
  recA Neisseria gonorrhoeae MS11

72.274

90.169

0.652
  recA Glaesserella parasuis strain SC1401

64.972

99.438

0.646
  recA Acinetobacter baumannii D1279779

70.717

90.169

0.638
  recA Pseudomonas stutzeri DSM 10701

70

89.888

0.629
  recA Vibrio cholerae strain A1552

68.847

90.169

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.847

90.169

0.621
  recA Helicobacter pylori strain NCTC11637

63.743

96.067

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

65.559

92.978

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.559

92.978

0.61
  recA Helicobacter pylori 26695

63.158

96.067

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.951

91.573

0.604
  recA Streptococcus mitis SK321

58.402

100

0.596
  recA Streptococcus mitis NCTC 12261

60.519

97.472

0.59
  recA Streptococcus pneumoniae TIGR4

59.942

97.472

0.584
  recA Streptococcus pneumoniae R6

59.942

97.472

0.584
  recA Streptococcus pneumoniae D39

59.942

97.472

0.584
  recA Streptococcus pneumoniae Rx1

59.942

97.472

0.584
  recA Streptococcus mutans UA159

59.71

96.91

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

63.077

91.292

0.576
  recA Streptococcus pyogenes NZ131

60.976

92.135

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.06

93.539

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.291

88.764

0.562

Multiple sequence alignment