Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ALIDE_RS21030 Genome accession   NC_014910
Coordinates   4420796..4421905 (+) Length   369 a.a.
NCBI ID   WP_013520970.1    Uniprot ID   A0A858ZZB7
Organism   Alicycliphilus denitrificans BC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4415796..4426905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALIDE_RS21010 (Alide_4223) alr 4417163..4418239 (-) 1077 WP_013520966.1 alanine racemase -
  ALIDE_RS21015 (Alide_4224) - 4418236..4419546 (-) 1311 WP_013520967.1 D-amino acid dehydrogenase -
  ALIDE_RS21020 (Alide_4225) - 4419673..4420185 (+) 513 WP_013520968.1 winged helix-turn-helix transcriptional regulator -
  ALIDE_RS21025 (Alide_4226) - 4420170..4420649 (-) 480 WP_013520969.1 MarR family winged helix-turn-helix transcriptional regulator -
  ALIDE_RS21030 (Alide_4227) recA 4420796..4421905 (+) 1110 WP_013520970.1 recombinase RecA Machinery gene
  ALIDE_RS21035 (Alide_4228) recX 4421986..4422444 (+) 459 WP_013520971.1 recombination regulator RecX -
  ALIDE_RS21040 (Alide_4229) - 4422500..4424794 (-) 2295 WP_013520972.1 DUF1631 family protein -
  ALIDE_RS21045 (Alide_4230) secF 4424851..4425804 (-) 954 WP_013520973.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39219.01 Da        Isoelectric Point: 5.3923

>NTDB_id=39349 ALIDE_RS21030 WP_013520970.1 4420796..4421905(+) (recA) [Alicycliphilus denitrificans BC]
MDTIAKTNPAANSEKAKALQAALAQIEKQFGKGTIMRLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKLGGTCAFIDAEHALDTAYAQKLGVNINDILISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALV
PKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGT
IKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFLR
ENPDLAREIENKVREGLGIALLPGATAAQAPEDKPARGKKSEKAAGAEA

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=39349 ALIDE_RS21030 WP_013520970.1 4420796..4421905(+) (recA) [Alicycliphilus denitrificans BC]
ATGGACACCATCGCCAAGACCAACCCCGCCGCCAACAGCGAAAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCAGATCGA
GAAGCAGTTCGGCAAGGGCACCATCATGCGCCTGGGCGAGGGCGAGGCCATCGAGGACATCCAGGTCGTCTCCACCGGCT
CGCTGGGCCTGGACATCGCCCTGGGCGTGGGCGGCCTGCCGCGCGGGCGCGTGGTCGAGATCTACGGCCCCGAGTCCTCG
GGCAAGACCACGCTCACGCTGCAGGTCATCGCCGAGATGCAAAAGCTCGGCGGCACCTGCGCCTTCATCGACGCCGAGCA
CGCGCTCGACACCGCCTACGCGCAGAAGCTCGGCGTGAACATCAACGACATCCTCATCAGCCAGCCCGACACCGGCGAGC
AGGCGCTGGAGATCGTGGACAGCCTGGTGCGCTCGGGCGCGGTGGACCTGATCGTGGTGGACTCGGTCGCCGCCCTGGTG
CCGAAGGCCGAGATCGAGGGCGAGATGGGCGACGCCCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAA
GCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCG
GCAGCCCCGAGACGACGACGGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCACC
ATCAAGAAGGGCGACGAGGCCATCGGCAACGAGACCAAGGTGAAGGTGGTCAAGAACAAGGTCTCGCCCCCGTTCAAGAC
GGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCTCGCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCGCGCATCC
TGGAGAAAAGCGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCGCGCGAATTCCTGCGC
GAGAACCCCGACCTGGCGCGCGAGATCGAGAACAAGGTGCGCGAGGGCCTGGGCATCGCCCTGCTGCCCGGCGCCACCGC
GGCCCAGGCGCCCGAGGACAAGCCCGCGCGCGGCAAGAAGAGCGAAAAGGCCGCCGGCGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A858ZZB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.012

88.889

0.729
  recA Pseudomonas stutzeri DSM 10701

73.006

88.347

0.645
  recA Acinetobacter baylyi ADP1

68.314

93.225

0.637
  recA Acinetobacter baumannii D1279779

68.513

92.954

0.637
  recA Neisseria gonorrhoeae MS11

72.136

87.534

0.631
  recA Neisseria gonorrhoeae MS11

72.136

87.534

0.631
  recA Neisseria gonorrhoeae strain FA1090

72.136

87.534

0.631
  recA Glaesserella parasuis strain SC1401

70.988

87.805

0.623
  recA Vibrio cholerae strain A1552

70.552

88.347

0.623
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.552

88.347

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.882

92.141

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.869

89.16

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

88.618

0.58
  recA Streptococcus mitis SK321

59.003

97.832

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

63.964

90.244

0.577
  recA Streptococcus mitis NCTC 12261

58.726

97.832

0.575
  recA Streptococcus pneumoniae TIGR4

59.718

96.206

0.575
  recA Streptococcus pneumoniae R6

59.718

96.206

0.575
  recA Streptococcus pneumoniae D39

59.718

96.206

0.575
  recA Streptococcus pneumoniae Rx1

59.718

96.206

0.575
  recA Helicobacter pylori strain NCTC11637

64.242

89.431

0.575
  recA Helicobacter pylori 26695

64.242

89.431

0.575
  recA Streptococcus pyogenes NZ131

62.918

89.16

0.561
  recA Lactococcus lactis subsp. cremoris KW2

62.236

89.702

0.558
  recA Streptococcus mutans UA159

62.424

89.431

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.816

88.347

0.528

Multiple sequence alignment