Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FIV08_RS05675 Genome accession   NZ_CP045324
Coordinates   1226305..1227348 (+) Length   347 a.a.
NCBI ID   WP_152437650.1    Uniprot ID   -
Organism   Marinobacter sp. THAF197a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1221305..1232348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV08_RS05660 (FIV08_05710) fdxA 1222417..1222740 (-) 324 WP_011785560.1 ferredoxin FdxA -
  FIV08_RS05665 (FIV08_05715) mutS 1222904..1225537 (-) 2634 WP_152437648.1 DNA mismatch repair protein MutS -
  FIV08_RS05670 (FIV08_05720) pncC 1225641..1226141 (+) 501 WP_152437649.1 nicotinamide-nucleotide amidase -
  FIV08_RS05675 (FIV08_05725) recA 1226305..1227348 (+) 1044 WP_152437650.1 recombinase RecA Machinery gene
  FIV08_RS05680 (FIV08_05730) - 1227650..1228117 (+) 468 WP_152437651.1 flavodoxin family protein -
  FIV08_RS05685 (FIV08_05735) - 1228118..1228495 (-) 378 WP_058093151.1 PilZ domain-containing protein -
  FIV08_RS05690 (FIV08_05740) - 1228735..1231143 (+) 2409 WP_152437652.1 Lon protease family protein -
  FIV08_RS05695 (FIV08_05745) fixJ 1231182..1231802 (+) 621 WP_058093114.1 response regulator FixJ -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37308.98 Da        Isoelectric Point: 5.5419

>NTDB_id=393444 FIV08_RS05675 WP_152437650.1 1226305..1227348(+) (recA) [Marinobacter sp. THAF197a]
MEDNRKKALSAALGQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFIDAEHALDPIYAEKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAIDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGKANACKFLEENLDIANEIEA
KVRDKLMPKPVKKEAAEAPAEASGELL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=393444 FIV08_RS05675 WP_152437650.1 1226305..1227348(+) (recA) [Marinobacter sp. THAF197a]
ATGGAAGACAATCGCAAGAAAGCACTCAGCGCAGCACTCGGCCAGATTGAGCGCCAGTTCGGTAAAGGTGCCGTGATGAA
AATGGGCGACCAGCCCCGTGAAGCCATTCCTGCGGTATCCACCGGTTCCCTCGGGCTGGACGTCGCCCTGGGTATTGGCG
GTCTGCCCTACGGCCGGATCGTTGAAATCTACGGCCCGGAAAGCTCCGGTAAAACCACACTGACCCTGCAGGTTATTGCG
GAAGCCCAAAAGGCCGGGAAAACCTGCGCCTTCATTGACGCCGAGCACGCGCTTGACCCCATTTACGCGGAAAAGCTGGG
CGTAAACGTAGACGACCTGCTGGTGTCCCAGCCAGACACCGGCGAACAGGCCCTGGAAATCGCCGACATGCTGGTGCGCT
CCAACGCCATTGACGTGATCATCGTCGACTCCGTTGCCGCACTGACACCGAAAGCCGAAATCGAAGGCGAAATGGGCGAC
AGCCACGTAGGCCTCCAGGCCCGCCTGATGTCCCAGGCCCTGCGTAAACTGACCGGTAACGTCAAACACGCCAACTGCCT
GATGGTCTTCATCAACCAGATCCGTATGAAAATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAATTCTACTCCTCCGTACGTTTGGACATCCGCCGCATTGGTGCTGTCAAAGAGGGCGACGAAGTGGTCGGTAACGAA
ACCCGCGTAAAAGTCGTCAAGAACAAGGTATCTCCGCCCTTCAAACAGGCCGAGTTCCAGATCATGTACGGCAAGGGCAT
CTACCACATGGCCGAAGTGCTGGACATGGGCGTTAAAGAAGGCTTCGTCGACAAATCCGGCGCCTGGTACGCCTACAACG
GCGACAAAATCGGCCAGGGCAAAGCCAACGCCTGCAAGTTCCTGGAAGAGAACCTGGACATCGCCAACGAAATCGAAGCC
AAGGTTCGCGACAAACTGATGCCCAAGCCGGTGAAGAAAGAAGCGGCAGAAGCGCCAGCGGAAGCGAGCGGCGAGTTGCT
GTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.551

99.424

0.781
  recA Acinetobacter baylyi ADP1

71.47

100

0.715
  recA Acinetobacter baumannii D1279779

73.394

94.236

0.692
  recA Vibrio cholerae strain A1552

73.089

94.236

0.689
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.089

94.236

0.689
  recA Ralstonia pseudosolanacearum GMI1000

70.294

97.983

0.689
  recA Glaesserella parasuis strain SC1401

71.951

94.524

0.68
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.372

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.236

0.599
  recA Helicobacter pylori strain NCTC11637

61.424

97.118

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

95.965

0.591
  recA Helicobacter pylori 26695

60.831

97.118

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

60.87

92.795

0.565
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

93.372

0.545
  recA Streptococcus pneumoniae Rx1

57.669

93.948

0.542
  recA Streptococcus pneumoniae D39

57.669

93.948

0.542
  recA Streptococcus pneumoniae R6

57.669

93.948

0.542
  recA Streptococcus pneumoniae TIGR4

57.669

93.948

0.542
  recA Lactococcus lactis subsp. cremoris KW2

58.204

93.084

0.542
  recA Streptococcus pyogenes NZ131

57.012

94.524

0.539
  recA Streptococcus mitis NCTC 12261

57.585

93.084

0.536
  recA Streptococcus mitis SK321

57.276

93.084

0.533

Multiple sequence alignment