Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GCS91_RS29600 Genome accession   NZ_CP045291
Coordinates   6419990..6421093 (+) Length   367 a.a.
NCBI ID   WP_154836140.1    Uniprot ID   -
Organism   Delftia tsuruhatensis strain TR1180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6414990..6426093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCS91_RS29580 (GCS91_29580) - 6416008..6416988 (+) 981 WP_016454232.1 LysR substrate-binding domain-containing protein -
  GCS91_RS29585 (GCS91_29585) - 6416972..6418471 (-) 1500 WP_154836138.1 sensor histidine kinase -
  GCS91_RS29590 (GCS91_29590) - 6418567..6419241 (-) 675 WP_012202808.1 response regulator transcription factor -
  GCS91_RS29595 (GCS91_29595) - 6419342..6419842 (-) 501 WP_017407164.1 MarR family winged helix-turn-helix transcriptional regulator -
  GCS91_RS29600 (GCS91_29600) recA 6419990..6421093 (+) 1104 WP_154836140.1 recombinase RecA Machinery gene
  GCS91_RS29605 (GCS91_29605) recX 6421296..6421775 (+) 480 WP_016449399.1 recombination regulator RecX -
  GCS91_RS29610 (GCS91_29610) yddG 6421772..6422692 (-) 921 WP_074920882.1 aromatic amino acid DMT transporter YddG -
  GCS91_RS29615 (GCS91_29615) - 6422776..6424527 (-) 1752 WP_227740855.1 hypothetical protein -
  GCS91_RS29620 (GCS91_29620) argC 6424524..6425456 (-) 933 WP_047326385.1 N-acetyl-gamma-glutamyl-phosphate reductase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38996.64 Da        Isoelectric Point: 5.1978

>NTDB_id=393134 GCS91_RS29600 WP_154836140.1 6419990..6421093(+) (recA) [Delftia tsuruhatensis strain TR1180]
MNTAVTTANSEKAKALQAALAQIEKQFGKGTIMRLGEGEAIQDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDMIVVDSVAALTPRA
EIEGEMGDQLPGLQARLMSQALRKLTSTIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKK
GDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENS
DLAVEIENKVRDSLGIALLPTAGGDAPEAKAAKGAKAKADKDGVIEA

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=393134 GCS91_RS29600 WP_154836140.1 6419990..6421093(+) (recA) [Delftia tsuruhatensis strain TR1180]
ATGAACACCGCCGTCACCACCGCCAACAGTGAAAAAGCCAAGGCCCTGCAGGCCGCACTCGCCCAGATCGAAAAGCAGTT
CGGCAAGGGCACGATCATGCGCCTGGGTGAAGGCGAAGCCATCCAGGACATCCAGGTCGTCTCCACCGGCTCGCTGGGCC
TGGACATCGCCCTGGGTGTGGGCGGCCTGCCCCGTGGCCGCGTGATCGAGATCTACGGCCCTGAATCCTCGGGCAAGACC
ACGCTGACGCTGCAGGTCATCGCCGAAATGCAAAAGCAGGGTGGCACCTGCGCCTTCATCGACGCAGAACACGCGCTGGA
CACCAGCTATGCCCAGAAGCTGGGCGTGAACCTCAACGAAGTGCTGATCAGCCAGCCCGACACCGGCGAGCAGGCCCTGG
AAATCGTGGACAGCCTGGTGCGCTCGGGCGCCGTGGACATGATCGTCGTGGACTCGGTGGCCGCACTGACCCCCCGCGCC
GAAATCGAAGGCGAGATGGGCGACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCTC
CACCATCAAGAAGACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCG
AAACCACCACGGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGCACCGGCACCATCAAGAAG
GGCGACGAAGCCATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCGCCCCCGTTCAAGACCGCCGAGTT
CGACATCCTCTTCGGCGAAGGCATCTCGCGCGAAGGTGAAATCCTGGACATGGGCGTCAACGCCAAGATCCTCGACAAGT
CGGGGGCCTGGTACGCCTACAACGGCGAAAAGATCGGCCAGGGTCGCGACAACGCCCGCGAATTCCTGCGCGAGAACAGC
GACCTGGCCGTGGAGATCGAGAACAAGGTGCGCGACAGCCTGGGCATTGCCCTGCTGCCCACGGCCGGCGGCGATGCGCC
CGAAGCCAAGGCCGCCAAGGGCGCCAAGGCCAAGGCCGACAAGGACGGCGTGATCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.21

85.559

0.695
  recA Neisseria gonorrhoeae MS11

67.919

94.278

0.64
  recA Neisseria gonorrhoeae MS11

67.919

94.278

0.64
  recA Neisseria gonorrhoeae strain FA1090

67.919

94.278

0.64
  recA Glaesserella parasuis strain SC1401

69.76

91.008

0.635
  recA Pseudomonas stutzeri DSM 10701

70.859

88.828

0.629
  recA Acinetobacter baumannii D1279779

70.245

88.828

0.624
  recA Acinetobacter baylyi ADP1

69.939

88.828

0.621
  recA Vibrio cholerae strain A1552

69.325

88.828

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.325

88.828

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.469

91.826

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.565

89.646

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

89.101

0.578
  recA Helicobacter pylori strain NCTC11637

64.329

89.373

0.575
  recA Helicobacter pylori 26695

64.329

89.373

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

63.363

90.736

0.575
  recA Streptococcus mutans UA159

58.333

98.093

0.572
  recA Streptococcus pyogenes NZ131

62.31

89.646

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.631

90.191

0.556
  recA Streptococcus pneumoniae D39

61.329

90.191

0.553
  recA Streptococcus pneumoniae Rx1

61.329

90.191

0.553
  recA Streptococcus pneumoniae R6

61.329

90.191

0.553
  recA Streptococcus pneumoniae TIGR4

61.329

90.191

0.553
  recA Streptococcus mitis SK321

61.027

90.191

0.55
  recA Streptococcus mitis NCTC 12261

61.027

90.191

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.308

88.556

0.534

Multiple sequence alignment