Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RUMAL_RS11195 Genome accession   NC_014833
Coordinates   2474504..2475700 (-) Length   398 a.a.
NCBI ID   WP_013498854.1    Uniprot ID   P49985
Organism   Ruminococcus albus 7 = DSM 20455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2469504..2480700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUMAL_RS11165 (Rumal_2205) - 2469650..2470273 (-) 624 WP_013498848.1 hypothetical protein -
  RUMAL_RS11170 (Rumal_2206) cysE 2470274..2470945 (-) 672 WP_013498849.1 serine O-acetyltransferase -
  RUMAL_RS11175 (Rumal_2207) pgsA 2471328..2471921 (-) 594 WP_013498850.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RUMAL_RS11180 (Rumal_2208) rimO 2471934..2473265 (-) 1332 WP_013498851.1 30S ribosomal protein S12 methylthiotransferase RimO -
  RUMAL_RS11185 (Rumal_2209) - 2473459..2473863 (-) 405 WP_013498852.1 hypothetical protein -
  RUMAL_RS11190 (Rumal_2210) - 2473867..2474502 (-) 636 WP_037303853.1 regulatory protein RecX -
  RUMAL_RS11195 (Rumal_2211) recA 2474504..2475700 (-) 1197 WP_013498854.1 recombinase RecA Machinery gene
  RUMAL_RS11200 (Rumal_2212) - 2475847..2476227 (-) 381 WP_013498855.1 hypothetical protein -
  RUMAL_RS11205 (Rumal_2213) - 2476254..2476916 (-) 663 WP_013498856.1 leucine-rich repeat protein -
  RUMAL_RS11210 (Rumal_2214) prmC 2476913..2477767 (-) 855 WP_037303852.1 peptide chain release factor N(5)-glutamine methyltransferase -
  RUMAL_RS11215 (Rumal_2215) - 2477761..2478729 (-) 969 WP_013498858.1 DUF1385 domain-containing protein -
  RUMAL_RS11220 (Rumal_2216) - 2478719..2480245 (-) 1527 WP_013498859.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 42820.00 Da        Isoelectric Point: 4.9287

>NTDB_id=39279 RUMAL_RS11195 WP_013498854.1 2474504..2475700(-) (recA) [Ruminococcus albus 7 = DSM 20455]
MAIDKKKKEKDVKVHNITDAEEKKKALETAIAFIEKQFGKGAIMKLGDARAMDVEAIPTGSMMLDMALGIGGVPRGRIIE
IYGPESSGKTTVALHIIAETQKMGGEVAFIDVEHALDPVYAKNLGVDIDSMLVSQPDSGEQALEIAEALARSGAIDCIVI
DSVAAMVTKAEIDGEMGDTHVGQLARLMSQAMRKLTGVVSKSNTTCVFINQVREKIGVMYGNPETTPGGRALKFYASVRI
EVRRGEQIKDGGEVLGNRTKCKVVKNKVAPPFKECEFDIMYGKGISRVGEVLDTAVDLGIVKKGGAWFSYEDYKLGQGRD
NSKQFLLDHPDIMAEIENKIKASSAEMIAAAGQKNDKKSKLEEKANAGAGISEASEPDSSAEEDFEEFAPIDIGSLGE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=39279 RUMAL_RS11195 WP_013498854.1 2474504..2475700(-) (recA) [Ruminococcus albus 7 = DSM 20455]
ATGGCTATCGATAAGAAGAAAAAGGAAAAGGACGTCAAGGTCCACAACATCACAGACGCTGAGGAAAAGAAGAAGGCTCT
TGAAACTGCTATCGCATTCATCGAGAAGCAGTTCGGAAAGGGCGCTATAATGAAGCTTGGCGATGCAAGAGCCATGGACG
TTGAGGCTATACCCACAGGTTCCATGATGCTGGATATGGCACTCGGTATCGGTGGAGTTCCCCGTGGACGTATCATTGAG
ATATACGGACCCGAGTCCTCAGGTAAGACAACAGTTGCACTGCATATTATCGCTGAAACTCAGAAAATGGGCGGCGAGGT
CGCTTTCATAGACGTTGAGCACGCACTTGACCCTGTATATGCCAAGAACCTGGGTGTTGATATAGACAGTATGCTTGTAT
CACAGCCCGACAGCGGTGAACAGGCACTGGAGATCGCTGAAGCGCTGGCAAGATCGGGTGCTATCGACTGTATAGTTATC
GACTCCGTTGCAGCTATGGTAACAAAGGCTGAGATCGACGGTGAAATGGGCGATACTCACGTAGGTCAGCTGGCAAGACT
TATGTCACAGGCTATGAGAAAGCTGACTGGCGTTGTTTCAAAATCAAACACCACCTGCGTATTCATTAATCAGGTGCGTG
AGAAGATAGGTGTAATGTACGGCAACCCAGAAACTACTCCGGGCGGACGTGCACTGAAGTTCTACGCTTCGGTGCGTATC
GAAGTAAGACGCGGCGAGCAGATAAAGGACGGTGGAGAAGTCCTCGGTAACAGGACTAAATGTAAGGTCGTAAAGAACAA
GGTGGCTCCTCCTTTCAAGGAGTGTGAGTTCGATATCATGTACGGCAAGGGTATCTCCCGTGTGGGTGAGGTGCTTGATA
CCGCTGTAGATCTTGGCATCGTCAAGAAGGGCGGCGCATGGTTCAGCTATGAGGATTATAAGCTGGGACAGGGCAGGGAC
AATTCCAAGCAGTTCCTTCTCGATCATCCAGATATTATGGCTGAGATCGAAAACAAGATCAAGGCTTCGTCTGCAGAAAT
GATCGCTGCAGCAGGTCAGAAGAACGATAAGAAGTCAAAGCTTGAAGAAAAGGCTAATGCAGGTGCAGGTATCTCAGAGG
CATCTGAACCAGATAGTTCTGCGGAAGAGGATTTTGAAGAATTTGCTCCTATAGATATAGGATCTCTCGGTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P49985

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

55.527

97.739

0.543
  recA Bacillus subtilis subsp. subtilis str. 168

66.25

80.402

0.533
  recA Helicobacter pylori strain NCTC11637

64.506

81.407

0.525
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

81.407

0.525
  recA Helicobacter pylori 26695

64.198

81.407

0.523
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.597

84.171

0.51
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.928

80.653

0.508
  recA Vibrio cholerae strain A1552

62.928

80.653

0.508
  recA Acinetobacter baumannii D1279779

62.617

80.653

0.505
  recA Streptococcus mitis SK321

62.037

81.407

0.505
  recA Streptococcus mitis NCTC 12261

62.037

81.407

0.505
  recA Streptococcus pneumoniae TIGR4

61.846

81.658

0.505
  recA Streptococcus pneumoniae Rx1

61.846

81.658

0.505
  recA Streptococcus pneumoniae D39

61.846

81.658

0.505
  recA Streptococcus pneumoniae R6

61.846

81.658

0.505
  recA Lactococcus lactis subsp. cremoris KW2

61.35

81.91

0.503
  recA Neisseria gonorrhoeae strain FA1090

58.997

85.176

0.503
  recA Neisseria gonorrhoeae MS11

58.997

85.176

0.503
  recA Neisseria gonorrhoeae MS11

58.997

85.176

0.503
  recA Acinetobacter baylyi ADP1

62.305

80.653

0.503
  recA Streptococcus pyogenes NZ131

61.538

81.658

0.503
  recA Streptococcus mutans UA159

61.231

81.658

0.5
  recA Latilactobacillus sakei subsp. sakei 23K

60.991

81.156

0.495
  recA Ralstonia pseudosolanacearum GMI1000

62.987

77.387

0.487
  recA Pseudomonas stutzeri DSM 10701

60.248

80.905

0.487
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.021

82.161

0.485

Multiple sequence alignment