Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GBA65_RS10905 Genome accession   NZ_CP045121
Coordinates   2123744..2124814 (-) Length   356 a.a.
NCBI ID   WP_166396582.1    Uniprot ID   -
Organism   Rubrobacter marinus strain SCSIO 52915     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2118744..2129814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBA65_RS10885 (GBA65_10695) - 2119041..2120441 (-) 1401 WP_166396578.1 MiaB/RimO family radical SAM methylthiotransferase -
  GBA65_RS10890 (GBA65_10700) - 2120481..2121404 (-) 924 WP_166396579.1 ATP-binding protein -
  GBA65_RS10895 (GBA65_10705) rny 2121416..2122972 (-) 1557 WP_166396580.1 ribonuclease Y -
  GBA65_RS10900 (GBA65_10710) - 2123084..2123695 (-) 612 WP_228281956.1 regulatory protein RecX -
  GBA65_RS10905 (GBA65_10715) recA 2123744..2124814 (-) 1071 WP_166396582.1 recombinase RecA Machinery gene
  GBA65_RS10910 (GBA65_10720) - 2125103..2125426 (+) 324 WP_166396583.1 hypothetical protein -
  GBA65_RS25185 - 2125450..2125575 (+) 126 WP_266096475.1 hypothetical protein -
  GBA65_RS26405 (GBA65_10725) - 2125692..2125850 (-) 159 Protein_2199 helix-turn-helix domain-containing protein -
  GBA65_RS10920 (GBA65_10730) - 2125914..2128400 (-) 2487 WP_166396584.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37741.73 Da        Isoelectric Point: 5.0574

>NTDB_id=392071 GBA65_RS10905 WP_166396582.1 2123744..2124814(-) (recA) [Rubrobacter marinus strain SCSIO 52915]
MDKTKAIGAAVSQIEKAFGKGSIMRMGDEGPKKMSSISTGALALDLALGIGGVPRGRIVEIYGPESSGKTTLALHVIAEA
QKAGGLAAFIDAEHALDPTYAEAIGVDLENLYFSQPDNGEQALEIADTLIRSGALDVVVIDSVAALVPRAEIEGEMGDSH
VGLQARLMSQALRKLSGSLSRSDTTAIFINQLREKIGVMFGSPETTPGGRALKFYSSVRLDVRRIGALKAGTDTVGNQTK
VTVRKNKVAPPFKEVFFDIMYGEGISKEGSLLDMGIQHDVVQKSGAWFAYGDERLGQGRENAKQFLKENDSVRNRILADI
HEKLGFAEPADGPEDDGAEDGAPNGRAAALGSERLG

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=392071 GBA65_RS10905 WP_166396582.1 2123744..2124814(-) (recA) [Rubrobacter marinus strain SCSIO 52915]
GTGGACAAGACCAAAGCGATAGGCGCCGCCGTCTCGCAGATAGAGAAGGCCTTCGGCAAGGGTTCGATCATGCGCATGGG
CGACGAGGGCCCGAAGAAGATGTCCTCGATCTCGACCGGCGCCCTCGCCCTCGACCTCGCGCTCGGTATCGGCGGGGTGC
CGAGGGGGCGCATCGTCGAGATCTACGGCCCCGAGTCGAGCGGCAAGACGACCCTCGCCCTGCACGTGATCGCCGAGGCC
CAGAAGGCCGGCGGCCTCGCGGCGTTCATCGACGCCGAGCACGCCCTCGACCCGACCTACGCCGAGGCGATCGGCGTCGA
CCTCGAGAACCTGTACTTCTCCCAGCCGGACAACGGCGAGCAGGCCCTCGAGATCGCCGACACCCTCATACGAAGCGGCG
CCCTCGACGTCGTCGTCATCGATTCCGTCGCCGCCCTCGTGCCGCGCGCCGAGATCGAGGGCGAGATGGGCGACTCCCAC
GTCGGCCTCCAGGCCCGCCTCATGAGCCAGGCCCTCAGGAAGCTCTCGGGCTCCCTGAGCCGCTCGGACACGACGGCCAT
CTTCATCAACCAGCTGCGCGAGAAGATCGGGGTAATGTTCGGCTCCCCGGAGACGACCCCGGGCGGCCGCGCCCTGAAGT
TCTACTCGAGCGTCAGGCTCGACGTCCGCAGGATCGGGGCGCTCAAGGCCGGCACCGACACGGTGGGCAACCAGACGAAG
GTGACGGTCCGCAAGAACAAGGTGGCGCCGCCGTTCAAGGAGGTCTTCTTCGACATCATGTACGGGGAGGGGATCTCCAA
GGAGGGGAGCCTCCTGGACATGGGCATCCAGCACGACGTGGTGCAGAAGTCCGGCGCCTGGTTCGCCTACGGCGACGAGC
GGCTCGGCCAGGGCCGCGAGAACGCCAAGCAGTTTCTCAAGGAGAACGACTCCGTGCGCAACCGCATCCTCGCCGACATC
CACGAGAAGCTCGGCTTCGCCGAGCCCGCCGACGGCCCCGAGGACGACGGGGCGGAGGACGGCGCGCCGAACGGCCGCGC
CGCCGCGCTCGGCTCCGAGCGCCTGGGCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.308

91.292

0.624
  recA Helicobacter pylori strain NCTC11637

64.634

92.135

0.596
  recA Helicobacter pylori 26695

64.634

92.135

0.596
  recA Streptococcus mitis SK321

60.286

98.315

0.593
  recA Streptococcus mitis NCTC 12261

60

98.315

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.471

95.506

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

62.388

94.101

0.587
  recA Streptococcus pneumoniae R6

61.062

95.225

0.581
  recA Streptococcus pneumoniae TIGR4

61.062

95.225

0.581
  recA Streptococcus pneumoniae Rx1

61.062

95.225

0.581
  recA Streptococcus pneumoniae D39

61.062

95.225

0.581
  recA Neisseria gonorrhoeae strain FA1090

64.174

90.169

0.579
  recA Neisseria gonorrhoeae MS11

64.174

90.169

0.579
  recA Neisseria gonorrhoeae MS11

64.174

90.169

0.579
  recA Streptococcus mutans UA159

58.405

98.596

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

92.416

0.576
  recA Ralstonia pseudosolanacearum GMI1000

65.705

87.64

0.576
  recA Acinetobacter baylyi ADP1

62.848

90.73

0.57
  recA Acinetobacter baumannii D1279779

62.848

90.73

0.57
  recA Lactococcus lactis subsp. cremoris KW2

63.323

89.607

0.567
  recA Pseudomonas stutzeri DSM 10701

62.229

90.73

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

91.292

0.565
  recA Streptococcus pyogenes NZ131

60.671

92.135

0.559
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

90.73

0.559
  recA Vibrio cholerae strain A1552

61.61

90.73

0.559
  recA Glaesserella parasuis strain SC1401

61.801

90.449

0.559

Multiple sequence alignment