Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GBA63_RS10465 Genome accession   NZ_CP045119
Coordinates   2107081..2108208 (+) Length   375 a.a.
NCBI ID   WP_166175860.1    Uniprot ID   A0A6G8Q9K9
Organism   Rubrobacter tropicus strain SCSIO 52909     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2102081..2113208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBA63_RS10450 (GBA63_10295) - 2102132..2103769 (+) 1638 WP_228282536.1 ribonuclease J -
  GBA63_RS23580 - 2104058..2104759 (+) 702 WP_228282415.1 hypothetical protein -
  GBA63_RS10455 (GBA63_10300) - 2104756..2106108 (+) 1353 WP_266096315.1 DNA translocase FtsK -
  GBA63_RS10460 (GBA63_10305) - 2106134..2106979 (+) 846 WP_166175858.1 helix-turn-helix domain-containing protein -
  GBA63_RS10465 (GBA63_10310) recA 2107081..2108208 (+) 1128 WP_166175860.1 recombinase RecA Machinery gene
  GBA63_RS10470 (GBA63_10315) - 2108221..2108829 (+) 609 WP_166175862.1 regulatory protein RecX -
  GBA63_RS10475 (GBA63_10320) rny 2108900..2110444 (+) 1545 WP_166175864.1 ribonuclease Y -
  GBA63_RS10480 (GBA63_10325) - 2110449..2111369 (+) 921 WP_166175866.1 ATP-binding protein -
  GBA63_RS10485 (GBA63_10330) - 2111366..2112685 (+) 1320 WP_166175868.1 MiaB/RimO family radical SAM methylthiotransferase -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39488.49 Da        Isoelectric Point: 4.8045

>NTDB_id=392055 GBA63_RS10465 WP_166175860.1 2107081..2108208(+) (recA) [Rubrobacter tropicus strain SCSIO 52909]
MEDALDKSKAIDAAVSQIERQFGKGSIMRMGDDERPKVPAISTGALALDLALGVGGLPRGRIVEIFGPESSGKTTLALHV
IAEAQKSGGLCAFVDAEHAIDPDYAQAIGVNLEDLYFSQPDNGEQALEIADTLIRSGALDVVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLSGSLNRSGTTAIFINQLREKIGVMFGSPETTPGGRALKFYSSVRLDIRRIGALKAGNDTVG
NQTRVKVVKNKVAPPFKVVEFDVMYGEGISREGSLLDIGIENGVVQKSGAWFAYGDERLGQGRENAKTFLKENEGVRNRV
LADIYDKLGFDNPNAGANAGANAGANADGANGSAERANGVADQDLVAEAPAGRPV

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=392055 GBA63_RS10465 WP_166175860.1 2107081..2108208(+) (recA) [Rubrobacter tropicus strain SCSIO 52909]
GTGGAGGATGCATTGGACAAGAGCAAAGCAATAGACGCCGCGGTATCCCAGATAGAGCGGCAGTTCGGCAAGGGCTCCAT
CATGAGGATGGGCGACGACGAGAGGCCAAAGGTCCCGGCCATCTCCACGGGCGCCCTCGCGCTCGATTTGGCGCTCGGTG
TCGGGGGATTGCCGCGGGGCAGGATCGTCGAGATCTTCGGCCCCGAGTCCAGCGGTAAGACCACCCTCGCCCTGCACGTT
ATAGCGGAGGCCCAGAAGTCCGGCGGCCTGTGCGCCTTCGTCGACGCCGAGCACGCCATCGACCCGGACTACGCCCAGGC
GATCGGGGTGAACCTGGAAGACCTCTACTTCTCCCAGCCGGACAACGGCGAGCAGGCCCTCGAGATAGCCGACACCCTCA
TCCGCTCCGGCGCCCTCGACGTCGTCGTTATCGACTCCGTCGCCGCCCTCGTGCCCCGCGCCGAGATAGAGGGCGAGATG
GGCGACTCCCACGTGGGGCTTCAGGCCAGGCTCATGAGCCAGGCCTTGCGGAAGCTCTCGGGCTCCCTCAACCGCTCGGG
GACGACGGCCATCTTCATAAACCAGCTTCGGGAGAAGATCGGGGTGATGTTCGGCTCCCCCGAGACGACGCCGGGCGGCC
GCGCCCTGAAGTTCTACTCCAGCGTCAGGCTCGACATCCGGCGCATCGGCGCCCTGAAGGCCGGCAACGACACGGTCGGC
AACCAGACGCGGGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCAAGGTCGTCGAGTTCGACGTCATGTACGGCGA
GGGCATCTCCCGCGAGGGGAGCCTGCTCGACATCGGCATCGAGAACGGGGTGGTCCAGAAGTCCGGCGCCTGGTTCGCCT
ACGGCGACGAGCGGCTCGGGCAGGGCCGCGAGAACGCCAAGACGTTCCTCAAGGAGAACGAGGGCGTCCGCAACCGCGTC
CTCGCCGACATCTACGACAAGCTCGGCTTCGACAACCCGAACGCCGGGGCGAACGCCGGGGCGAACGCCGGGGCGAACGC
CGACGGCGCTAACGGGTCCGCAGAGAGGGCCAACGGCGTCGCGGACCAGGACCTCGTCGCGGAGGCCCCGGCGGGTCGGC
CGGTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8Q9K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

66.972

87.2

0.584
  recA Pseudomonas stutzeri DSM 10701

62.682

91.467

0.573
  recA Neisseria gonorrhoeae MS11

66.875

85.333

0.571
  recA Neisseria gonorrhoeae MS11

66.875

85.333

0.571
  recA Neisseria gonorrhoeae strain FA1090

66.875

85.333

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

66.349

84

0.557
  recA Ralstonia pseudosolanacearum GMI1000

66.346

83.2

0.552
  recA Glaesserella parasuis strain SC1401

61.31

89.6

0.549
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.961

88.8

0.541
  recA Streptococcus mitis SK321

58

93.333

0.541
  recA Lactococcus lactis subsp. cremoris KW2

63.636

85.067

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.774

87.2

0.539
  recA Helicobacter pylori strain NCTC11637

62.154

86.667

0.539
  recA Streptococcus mitis NCTC 12261

57.714

93.333

0.539
  recA Vibrio cholerae strain A1552

65.584

82.133

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.584

82.133

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

87.733

0.533
  recA Helicobacter pylori 26695

61.538

86.667

0.533
  recA Streptococcus pyogenes NZ131

60.671

87.467

0.531
  recA Acinetobacter baumannii D1279779

61.61

86.133

0.531
  recA Streptococcus pneumoniae R6

60.486

87.733

0.531
  recA Streptococcus pneumoniae Rx1

60.486

87.733

0.531
  recA Streptococcus pneumoniae D39

60.486

87.733

0.531
  recA Streptococcus pneumoniae TIGR4

60.486

87.733

0.531
  recA Acinetobacter baylyi ADP1

61.3

86.133

0.528
  recA Streptococcus mutans UA159

63.141

83.2

0.525

Multiple sequence alignment