Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GBN67_RS05545 Genome accession   NZ_CP045051
Coordinates   1134663..1135706 (-) Length   347 a.a.
NCBI ID   WP_005401034.1    Uniprot ID   A0A1T1JM42
Organism   Acinetobacter johnsonii strain AJ312     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1132333..1139817 1134663..1135706 within 0
IScluster/Tn 1132333..1139951 1134663..1135706 within 0


Gene organization within MGE regions


Location: 1132333..1139951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS05530 (GBN67_05520) - 1132333..1133262 (-) 930 Protein_1058 IS5 family transposase -
  GBN67_RS05535 (GBN67_05525) - 1133304..1133840 (+) 537 WP_234963750.1 hypothetical protein -
  GBN67_RS05540 (GBN67_05530) - 1133951..1134556 (-) 606 WP_234963751.1 regulatory protein RecX -
  GBN67_RS05545 (GBN67_05535) recA 1134663..1135706 (-) 1044 WP_005401034.1 recombinase RecA Machinery gene
  GBN67_RS05550 (GBN67_05540) - 1135821..1136264 (-) 444 WP_004696588.1 RNA-binding S4 domain-containing protein -
  GBN67_RS05555 (GBN67_05545) - 1136257..1136931 (-) 675 WP_234963752.1 HAD-IA family hydrolase -
  GBN67_RS05560 (GBN67_05550) - 1137332..1138257 (-) 926 Protein_1064 IS5 family transposase -
  GBN67_RS16170 (GBN67_05555) - 1138320..1138394 (+) 75 Protein_1065 LysE family translocator -
  GBN67_RS05565 (GBN67_05560) - 1138635..1138880 (+) 246 WP_004696593.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37602.01 Da        Isoelectric Point: 5.0433

>NTDB_id=391528 GBN67_RS05545 WP_005401034.1 1134663..1135706(-) (recA) [Acinetobacter johnsonii strain AJ312]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGKNNVIRHLEENPQLAETIEK
IIREKLLTTANAAPVEENEEEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=391528 GBN67_RS05545 WP_005401034.1 1134663..1135706(-) (recA) [Acinetobacter johnsonii strain AJ312]
ATGGATGATAATAAAAGCAAGGCGCTCAATGCTGCGCTAAGCCAAATTGAAAAGCAGTTTGGTAAAAACACAGTAATGCG
TCTTGGCGATAACACCGTACAAGCTGTTGAAGCGGTATCAACGGGTTCTTTGACACTTGATATTGCTCTAGGCATTGGCG
GCTTACCAAAAGGCCGTATCGTTGAGATTTATGGTCCTGAATCTTCAGGTAAAACAACCATGACTTTACAAGCGATTGCT
GAATGTCAAAAAGCAGGTGGTACATGTGCATTTATCGATGCAGAACATGCTTTAGACCCACAGTATGCGCGTAAACTTGG
CGTAGATATTGACAATCTCTTGGTTTCTCAGCCTGACCATGGTGAGCAAGCACTTGAAATTGCAGACATGCTGGTTCGCT
CTGGTGCCATTGACCTCATCGTTGTCGACTCTGTTGCAGCATTGACACCACGTGCGGAAATTGAAGGTGAAATGGGCGAC
TCGCACATGGGCCTCCAAGCACGTTTAATGAGCCAAGCATTACGTAAAATTACAGGTAATGCAAAACGTTCAAACTGTAT
GGTGATTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAAACTACCACTGGTGGTAATGCGT
TGAAATTCTATGCGTCTGTGCGTTTAGACATTCGCCGCGTAGGTCAGGTCAAAGAAGGCGATGAAATCGTTGGTTCTGAA
ACCAAAGTGAAAGTTGTAAAAAACAAAATGGCACCTCCATTCCGTGAAGCGCTCTTCCAAATTTTATATGGTAAAGGCGT
CAACCACTTGGGCGAACTCGTAGACTTAGCTGTTCAACAAGAAATCGTACAAAAAGCAGGTGCTTGGTATTCATACCAAG
GTGATAAAATTGGTCAAGGTAAAAACAATGTGATCCGTCACCTTGAAGAAAACCCTCAGTTGGCTGAAACCATTGAGAAA
ATCATTCGAGAAAAACTACTGACGACTGCAAACGCTGCGCCTGTAGAAGAGAATGAAGAAGAGCCAGACTTTTTAGATGC
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1JM42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.691

100

0.922
  recA Acinetobacter baumannii D1279779

91.04

99.712

0.908
  recA Pseudomonas stutzeri DSM 10701

74.063

100

0.741
  recA Vibrio cholerae strain A1552

71.429

98.847

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.429

98.847

0.706
  recA Glaesserella parasuis strain SC1401

68.314

99.135

0.677
  recA Ralstonia pseudosolanacearum GMI1000

70.732

94.524

0.669
  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637
  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637
  recA Neisseria gonorrhoeae strain FA1090

68.21

93.372

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.559

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.389

0.614
  recA Helicobacter pylori strain NCTC11637

62.202

96.83

0.602
  recA Helicobacter pylori 26695

61.905

96.83

0.599
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.813

0.579
  recA Streptococcus pneumoniae R6

61.656

93.948

0.579
  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579
  recA Streptococcus pneumoniae D39

61.656

93.948

0.579
  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579
  recA Streptococcus pyogenes NZ131

61.28

94.524

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus mutans UA159

61.538

93.66

0.576
  recA Streptococcus mitis SK321

61.3

93.084

0.571
  recA Streptococcus mitis NCTC 12261

61.3

93.084

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

57.567

97.118

0.559
  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.084

0.545

Multiple sequence alignment