Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LH506_RS01710 Genome accession   NZ_CP044499
Coordinates   375011..376075 (+) Length   354 a.a.
NCBI ID   WP_057754062.1    Uniprot ID   A0A0R2BVD7
Organism   Lapidilactobacillus dextrinicus strain LH506     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 370011..381075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH506_RS01690 (LH506_01690) ymfI 371189..371926 (+) 738 WP_057754073.1 elongation factor P 5-aminopentanone reductase -
  LH506_RS01695 (LH506_01695) - 372014..372865 (+) 852 WP_057754070.1 RodZ family helix-turn-helix domain-containing protein -
  LH506_RS01700 (LH506_01700) pgsA 372879..373463 (+) 585 WP_057754067.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LH506_RS01705 (LH506_01705) - 373627..374871 (+) 1245 WP_057754064.1 competence/damage-inducible protein A -
  LH506_RS01710 (LH506_01710) recA 375011..376075 (+) 1065 WP_057754062.1 recombinase RecA Machinery gene
  LH506_RS01715 (LH506_01715) rny 376287..377855 (+) 1569 WP_057754059.1 ribonuclease Y -
  LH506_RS01720 (LH506_01720) - 377980..379068 (+) 1089 WP_083479485.1 glycosyltransferase family 4 protein -
  LH506_RS01725 (LH506_01725) - 379122..379754 (-) 633 WP_057754054.1 YigZ family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38016.14 Da        Isoelectric Point: 4.8186

>NTDB_id=390612 LH506_RS01710 WP_057754062.1 375011..376075(+) (recA) [Lapidilactobacillus dextrinicus strain LH506]
MAKDERQAALDAALKKIEKNYGKGAVMRMGDKVDTQIETVSTGSLALDNALGVGGYPRGRIVEVYGPESSGKTTVALHAV
AEVQRNGGTAAYIDAENAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVTSGAVDIIVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGKINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGTDIIGN
RVKIKVVKNKVAPPFKLAIVDIMYGQGISRTGELIDMAADKDIVKKSGSWYSYNDEHIGQGRENAKQYLVDHPDIEAEIR
QKVRAAYDMDGLAADAAASTDVDDKVEETDLLSD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=390612 LH506_RS01710 WP_057754062.1 375011..376075(+) (recA) [Lapidilactobacillus dextrinicus strain LH506]
ATGGCTAAAGATGAACGTCAAGCAGCTTTGGATGCTGCATTAAAAAAGATTGAAAAGAATTATGGTAAGGGTGCCGTTAT
GCGCATGGGCGATAAAGTCGATACGCAAATCGAAACAGTATCAACTGGTTCATTAGCGCTTGATAATGCATTAGGTGTTG
GTGGCTATCCTCGCGGCCGGATTGTTGAAGTATATGGTCCTGAAAGTTCTGGTAAAACAACAGTTGCTTTACATGCCGTT
GCTGAAGTTCAACGTAATGGTGGCACAGCAGCATATATTGATGCTGAAAACGCAATGGATCCTGCTTACGCCACTGCTTT
AGGCGTTAACATTGATGATTTATTGCTATCACAACCTGATACTGGAGAACAAGGACTTGAAATTGCTGATGCCTTAGTTA
CCAGTGGAGCAGTGGATATTATTGTTGTGGATTCAGTGGCTGCATTAGTTCCGCGTGCTGAAATTGAAGGTGAAATGGGC
GATGCCCATGTCGGCTTACAAGCTCGTTTAATGTCCCAAGCTTTGCGTAAGCTTTCTGGTAAGATTAACAAAACGAAAAC
AATTGCGATTTTTATTAATCAAATTCGTGAAAAAGTCGGTATTATGTTTGGTAATCCTGAAACAACACCAGGTGGTCGTG
CTTTGAAATTCTATGCAACAATTCGTTTGGAAGTTCGTCGAGCTGAACAAATTAAAGATGGTACGGATATTATTGGTAAC
CGTGTCAAAATTAAAGTTGTTAAAAATAAAGTTGCACCACCATTTAAGTTGGCAATTGTCGATATTATGTATGGTCAAGG
AATTTCACGTACGGGTGAATTGATTGATATGGCCGCAGATAAAGATATTGTTAAGAAAAGTGGCTCTTGGTACTCATATA
ACGACGAACATATCGGTCAAGGTCGGGAGAATGCTAAGCAATACTTGGTTGATCATCCAGATATTGAAGCTGAAATTCGA
CAAAAAGTTAGAGCAGCTTATGATATGGACGGTTTAGCCGCTGATGCAGCAGCGTCAACTGATGTAGACGATAAGGTTGA
GGAAACAGATTTGTTGTCTGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2BVD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

87.156

92.373

0.805
  recA Bacillus subtilis subsp. subtilis str. 168

74.54

92.09

0.686
  recA Streptococcus mutans UA159

67.416

100

0.678
  recA Streptococcus pyogenes NZ131

68.195

98.588

0.672
  recA Streptococcus mitis SK321

65.819

100

0.658
  recA Streptococcus pneumoniae D39

66.092

98.305

0.65
  recA Streptococcus pneumoniae Rx1

66.092

98.305

0.65
  recA Streptococcus pneumoniae R6

66.092

98.305

0.65
  recA Streptococcus pneumoniae TIGR4

66.092

98.305

0.65
  recA Streptococcus mitis NCTC 12261

68.997

92.938

0.641
  recA Lactococcus lactis subsp. cremoris KW2

68.085

92.938

0.633
  recA Acinetobacter baylyi ADP1

59.143

98.87

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.302

97.175

0.576
  recA Vibrio cholerae strain A1552

59.302

97.175

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.145

93.785

0.573
  recA Acinetobacter baumannii D1279779

57.88

98.588

0.571
  recA Neisseria gonorrhoeae MS11

62.229

91.243

0.568
  recA Neisseria gonorrhoeae MS11

62.229

91.243

0.568
  recA Neisseria gonorrhoeae strain FA1090

62.229

91.243

0.568
  recA Pseudomonas stutzeri DSM 10701

62.112

90.96

0.565
  recA Ralstonia pseudosolanacearum GMI1000

64.935

87.006

0.565
  recA Glaesserella parasuis strain SC1401

56.98

99.153

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

91.243

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.697

93.22

0.556
  recA Helicobacter pylori 26695

58.537

92.655

0.542
  recA Helicobacter pylori strain NCTC11637

58.537

92.655

0.542

Multiple sequence alignment