Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FSC10_RS08410 Genome accession   NZ_CP044463
Coordinates   1722955..1723998 (+) Length   347 a.a.
NCBI ID   WP_005221756.1    Uniprot ID   A0AAE2MVZ4
Organism   Acinetobacter schindleri strain HZE23-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717955..1728998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS08380 (FSC10_08400) - 1718371..1719036 (-) 666 WP_163171420.1 NAD-dependent epimerase/dehydratase family protein -
  FSC10_RS08385 (FSC10_08405) rpsT 1719251..1719520 (+) 270 WP_004786139.1 30S ribosomal protein S20 -
  FSC10_RS16665 - 1719769..1719894 (-) 126 WP_004894429.1 hypothetical protein -
  FSC10_RS08390 (FSC10_08410) - 1720015..1720764 (-) 750 WP_008305272.1 histidine phosphatase family protein -
  FSC10_RS08395 (FSC10_08415) - 1720825..1721676 (-) 852 WP_163171421.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FSC10_RS08400 (FSC10_08420) - 1721689..1722375 (+) 687 WP_163171422.1 HAD-IA family hydrolase -
  FSC10_RS08405 (FSC10_08425) - 1722368..1722808 (+) 441 WP_004812671.1 RNA-binding S4 domain-containing protein -
  FSC10_RS08410 (FSC10_08430) recA 1722955..1723998 (+) 1044 WP_005221756.1 recombinase RecA Machinery gene
  FSC10_RS08415 (FSC10_08435) - 1724076..1724693 (+) 618 WP_163171423.1 regulatory protein RecX -
  FSC10_RS08425 (FSC10_08445) - 1725296..1726117 (+) 822 WP_163166244.1 YbgF trimerization domain-containing protein -
  FSC10_RS08430 (FSC10_08450) lpxA 1726177..1726965 (-) 789 WP_163166246.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  FSC10_RS08435 (FSC10_08455) fabZ 1726962..1727447 (-) 486 WP_026056779.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FSC10_RS08440 (FSC10_08460) lpxD 1727453..1728523 (-) 1071 WP_163171424.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37663.09 Da        Isoelectric Point: 4.9489

>NTDB_id=390171 FSC10_RS08410 WP_005221756.1 1722955..1723998(+) (recA) [Acinetobacter schindleri strain HZE23-1]
MDENKNKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEENKALADTIEK
LIREQLLTTGNVVEDKDEEEPADFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=390171 FSC10_RS08410 WP_005221756.1 1722955..1723998(+) (recA) [Acinetobacter schindleri strain HZE23-1]
ATGGATGAGAATAAAAACAAGGCGCTGAATGCTGCCTTAAGCCAGATTGAAAAACAGTTTGGCAAAAACACAGTAATGCG
TCTTGGTGACAATACCGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTAACGCTTGATATCGCGCTCGGTATTGGCG
GTTTACCAAAAGGCCGTATTGTCGAGATCTATGGTCCTGAATCTTCAGGTAAAACCACAATGACATTACAAGCGATTGCA
GAATGTCAAAAAGCTGGTGGTACTTGTGCATTCATCGATGCGGAACACGCGCTTGATCCTCAATATGCACGTAAATTGGG
TGTAGATATCGACAACCTACTGGTATCTCAACCCGATCATGGTGAACAGGCACTTGAAATTGCCGACATGTTGGTACGTT
CAGGCGCGATTGACCTGATCGTTGTCGACTCCGTAGCTGCCCTGACCCCTCGTGCTGAGATTGAAGGCGAAATGGGTGAC
TCACACATGGGTCTGCAAGCACGTTTGATGAGCCAGGCACTGCGTAAAATCACTGGTAATGCCAAGCGTTCAAACTGTAT
GGTGATTTTCATTAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAGTCCGGAAACTACCACTGGTGGTAATGCAC
TGAAATTCTATGCTTCTGTACGTCTGGATATCCGACGTATTGGTCAGGTAAAAGAAGGCGACGAAATCGTTGGTTCTGAA
ACCAAAGTCAAAGTTGTGAAGAACAAAATGGCACCTCCATTTAAGGAAGCCCTATTCCAAATTCTGTATGGTAAAGGTGT
AAACCATCTCGGCGAACTGATTGACCTTGCAGTACAGCAGGAAATCGTACAGAAAGCCGGTGCTTGGTACTCTTATCAAG
GTGACAAGATTGGCCAAGGTAAGAACAACACAATTCGTTATCTGGAAGAGAACAAAGCACTTGCAGATACCATTGAAAAA
CTGATTCGTGAGCAGCTTTTGACGACAGGCAATGTGGTTGAAGATAAAGACGAAGAAGAACCAGCAGACTTTCTGGATGC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

90.258

100

0.908
  recA Acinetobacter baylyi ADP1

89.714

100

0.905
  recA Pseudomonas stutzeri DSM 10701

75.988

94.813

0.72
  recA Vibrio cholerae strain A1552

74.096

95.677

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.096

95.677

0.709
  recA Glaesserella parasuis strain SC1401

70.393

95.389

0.671
  recA Ralstonia pseudosolanacearum GMI1000

72.93

90.49

0.66
  recA Neisseria gonorrhoeae MS11

63.793

100

0.64
  recA Neisseria gonorrhoeae MS11

63.793

100

0.64
  recA Neisseria gonorrhoeae strain FA1090

63.793

100

0.64
  recA Helicobacter pylori strain NCTC11637

63.422

97.695

0.62
  recA Helicobacter pylori 26695

63.127

97.695

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

97.983

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

95.389

0.602
  recA Streptococcus pneumoniae R6

60.465

99.135

0.599
  recA Streptococcus pneumoniae Rx1

60.465

99.135

0.599
  recA Streptococcus pneumoniae D39

60.465

99.135

0.599
  recA Streptococcus pneumoniae TIGR4

60.465

99.135

0.599
  recA Streptococcus mutans UA159

60.641

98.847

0.599
  recA Streptococcus mitis NCTC 12261

59.767

98.847

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.795

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

93.948

0.579
  recA Streptococcus mitis SK321

61.35

93.948

0.576
  recA Streptococcus pyogenes NZ131

61.231

93.66

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.084

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.507

0.548

Multiple sequence alignment