Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PALPR_RS00995 Genome accession   NC_014734
Coordinates   248020..249042 (-) Length   340 a.a.
NCBI ID   WP_013443727.1    Uniprot ID   E4T0X7
Organism   Paludibacter propionicigenes WB4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 243020..254042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALPR_RS00975 (Palpr_0192) - 243550..244350 (+) 801 WP_041620103.1 transporter substrate-binding domain-containing protein -
  PALPR_RS00980 (Palpr_0193) metA 244415..245332 (+) 918 WP_013443724.1 homoserine O-acetyltransferase MetA -
  PALPR_RS00985 (Palpr_0194) - 245332..247155 (+) 1824 WP_013443725.1 peptidase U32 family protein -
  PALPR_RS00990 (Palpr_0195) tnpA 247390..247842 (-) 453 WP_013443726.1 IS200/IS605 family transposase -
  PALPR_RS00995 (Palpr_0196) recA 248020..249042 (-) 1023 WP_013443727.1 recombinase RecA Machinery gene
  PALPR_RS01000 (Palpr_0197) - 249134..251443 (-) 2310 WP_013443728.1 ATP-dependent helicase -
  PALPR_RS01005 (Palpr_0198) - 251717..252265 (+) 549 WP_013443729.1 lysophospholipid acyltransferase family protein -
  PALPR_RS01010 (Palpr_0199) - 252403..253173 (+) 771 WP_013443730.1 nitrilase-related carbon-nitrogen hydrolase -
  PALPR_RS01015 (Palpr_0200) - 253234..253767 (-) 534 WP_013443731.1 DUF2284 domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36730.16 Da        Isoelectric Point: 5.8977

>NTDB_id=39014 PALPR_RS00995 WP_013443727.1 248020..249042(-) (recA) [Paludibacter propionicigenes WB4]
MAKTTAEELKFPTSDKLKALQLAMDKIEKDHGKGTIMRMGDTKVEDVAFISTGSIGLNVALGVGGYPRGRVIEIYGPESS
GKTTLAIHAIAEAQKAGGIAAIIDAEHAFDRFYAEKLGVNIDELLISQPDNGEQALEIADQLIRSSAVDIVVIDSVAALT
PKAELEGDMGDSKMGLQARLMSQALRKLTANINKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASIRLDIRRIGQ
LKDGEEAIGNQTRVKVVKNKVAPPFRKAEFDIMYGEGISKTGEILDLGVEYGIIKKSGSWFSYGETKLAQGRDASKALIK
DNPELAAELEAKIVEAIQNK

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=39014 PALPR_RS00995 WP_013443727.1 248020..249042(-) (recA) [Paludibacter propionicigenes WB4]
ATGGCAAAAACAACAGCTGAGGAGTTGAAATTTCCAACCTCCGACAAACTGAAAGCATTGCAACTGGCAATGGACAAAAT
AGAGAAAGACCACGGAAAAGGCACCATCATGCGTATGGGCGACACAAAAGTGGAAGATGTGGCTTTCATTTCAACCGGAT
CTATCGGATTGAATGTGGCTCTGGGTGTAGGAGGTTATCCTCGTGGCCGTGTAATTGAAATTTACGGACCGGAATCTTCC
GGTAAAACTACGCTGGCTATCCACGCCATAGCTGAAGCTCAAAAGGCGGGTGGTATAGCGGCTATCATTGATGCCGAGCA
TGCTTTCGACCGCTTTTATGCCGAAAAACTGGGAGTAAACATTGATGAATTGCTTATTTCTCAACCTGACAATGGTGAGC
AGGCGTTGGAAATTGCAGATCAGTTAATACGTTCTTCGGCCGTGGATATTGTAGTGATCGACTCAGTAGCTGCATTGACT
CCTAAAGCAGAGTTAGAAGGCGATATGGGCGATTCAAAAATGGGATTGCAGGCACGTTTGATGTCACAGGCGTTACGTAA
ACTGACCGCCAACATCAACAAAACCAACACTACCTGTATTTTCATCAACCAGTTACGCGAGAAAATCGGTGTTATGTTTG
GTAACCCTGAAACAACAACCGGTGGTAATGCGCTGAAATTCTATGCGTCTATCCGGTTGGATATCCGTCGTATCGGTCAG
CTGAAAGATGGCGAAGAAGCTATCGGTAACCAAACCCGGGTGAAAGTGGTAAAAAACAAAGTTGCACCACCGTTCCGCAA
AGCTGAGTTCGATATTATGTACGGGGAAGGTATTTCAAAAACAGGTGAAATTCTTGATTTAGGCGTTGAATATGGTATCA
TCAAAAAAAGCGGTTCATGGTTTAGCTATGGCGAAACCAAACTTGCTCAGGGACGTGATGCTTCTAAAGCGCTGATTAAA
GATAATCCTGAACTTGCTGCTGAACTTGAAGCTAAGATTGTAGAAGCTATTCAGAACAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4T0X7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

70.809

100

0.721
  recA Glaesserella parasuis strain SC1401

67.296

93.529

0.629
  recA Neisseria gonorrhoeae MS11

65.839

94.706

0.624
  recA Neisseria gonorrhoeae MS11

65.839

94.706

0.624
  recA Neisseria gonorrhoeae strain FA1090

65.839

94.706

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

95.882

0.624
  recA Ralstonia pseudosolanacearum GMI1000

67.524

91.471

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

94.706

0.618
  recA Helicobacter pylori 26695

64.198

95.294

0.612
  recA Helicobacter pylori strain NCTC11637

64.198

95.294

0.612
  recA Acinetobacter baylyi ADP1

62.883

95.882

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.769

95.588

0.6
  recA Vibrio cholerae strain A1552

62.769

95.588

0.6
  recA Streptococcus mitis SK321

62.346

95.294

0.594
  recA Acinetobacter baumannii D1279779

62.539

95

0.594
  recA Streptococcus mutans UA159

60

98.529

0.591
  recA Streptococcus mitis NCTC 12261

62.037

95.294

0.591
  recA Streptococcus pneumoniae D39

61.728

95.294

0.588
  recA Streptococcus pneumoniae TIGR4

61.728

95.294

0.588
  recA Streptococcus pneumoniae R6

61.728

95.294

0.588
  recA Streptococcus pneumoniae Rx1

61.728

95.294

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

63.175

92.647

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.358

100

0.585
  recA Streptococcus pyogenes NZ131

61.61

95

0.585
  recA Pseudomonas stutzeri DSM 10701

62.382

93.824

0.585
  recA Lactococcus lactis subsp. cremoris KW2

60.802

95.294

0.579

Multiple sequence alignment