Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MPQ_RS10455 Genome accession   NC_014733
Coordinates   2203140..2204174 (+) Length   344 a.a.
NCBI ID   WP_013442912.1    Uniprot ID   -
Organism   Methylovorus sp. MP688     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2198140..2209174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPQ_RS10425 (MPQ_2133) mog 2198630..2199220 (+) 591 WP_041362323.1 molybdopterin adenylyltransferase -
  MPQ_RS10430 (MPQ_2134) thiL 2199232..2200188 (+) 957 WP_013442907.1 thiamine-phosphate kinase -
  MPQ_RS13580 (MPQ_2135) - 2200322..2201416 (+) 1095 WP_013442908.1 HAF repeat-containing protein -
  MPQ_RS10440 (MPQ_2136) - 2201485..2202003 (+) 519 WP_013442909.1 phosphatidylglycerophosphatase A -
  MPQ_RS10445 (MPQ_2137) - 2201976..2202476 (+) 501 WP_013442910.1 CinA family protein -
  MPQ_RS10450 (MPQ_2138) - 2202558..2202857 (-) 300 WP_041362848.1 hypothetical protein -
  MPQ_RS10455 (MPQ_2139) recA 2203140..2204174 (+) 1035 WP_013442912.1 recombinase RecA Machinery gene
  MPQ_RS10460 (MPQ_2140) - 2204188..2204751 (+) 564 WP_013442913.1 regulatory protein RecX -
  MPQ_RS10465 (MPQ_2141) alaS 2204782..2207406 (+) 2625 WP_013442914.1 alanine--tRNA ligase -
  MPQ_RS10470 (MPQ_2142) - 2207485..2208708 (+) 1224 WP_013442915.1 aspartate kinase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36842.08 Da        Isoelectric Point: 5.0390

>NTDB_id=39008 MPQ_RS10455 WP_013442912.1 2203140..2204174(+) (recA) [Methylovorus sp. MP688]
MDENKSKALAAALSQIEKQFGKGSIMRMGDTDVAADIQAVSTGSLGLDIALGIGGLPRGRIIEIYGPESSGKTTLTLSVI
AQMQKMGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGS
ETRVKVVKNKVAPPFKQAEFDILYGEGISREGEIIEMGVNLKLVEKSGAWYSYKGEKIGQGKDNAREYLREHADIANEID
AKIRANSNLAGAAMTVAPDDDGEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=39008 MPQ_RS10455 WP_013442912.1 2203140..2204174(+) (recA) [Methylovorus sp. MP688]
ATGGACGAAAACAAAAGCAAAGCGCTCGCCGCGGCCCTCTCGCAAATCGAGAAGCAATTCGGCAAAGGTTCTATCATGCG
CATGGGCGATACGGATGTCGCAGCCGACATTCAGGCCGTATCGACCGGCTCGCTCGGCCTCGACATCGCGCTGGGCATTG
GCGGCTTGCCTCGCGGCCGCATCATTGAAATCTACGGTCCGGAATCTTCCGGCAAAACCACACTGACGCTGTCTGTCATC
GCCCAGATGCAAAAAATGGGCGGCACCGCAGCCTTTATCGATGCCGAACACGCACTCGACCCACAATATGCCCAAAAGCT
CGGCGTTAACGTTTCCGACCTCCTGATCTCGCAACCAGACACGGGCGAGCAAGCCCTGGAAATCGCCGACATGCTTGTAC
GCTCAGGCTCAGTGGATATCGTGGTAGTGGACTCGGTGGCTGCACTGACACCCAAAGCCGAAATCGAAGGCGAAATGGGC
GACTCCCACATGGGTCTGCAAGCCCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACTGCCAACATCAAGCGCACCAATAC
CCTGGTGATTTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCAACCCCGAAACCACCACCGGTGGTAACG
CCCTGAAGTTTTACGCATCGGTTCGCCTGGATATCCGCCGCACCGGCGCGATCAAGAAGGGTGACGAAGTGATTGGCTCC
GAAACCCGCGTCAAAGTGGTCAAGAACAAAGTTGCGCCGCCATTCAAGCAGGCTGAGTTCGACATTCTGTACGGCGAGGG
CATTTCGCGCGAAGGCGAAATCATCGAGATGGGCGTTAACCTGAAACTGGTTGAAAAATCCGGCGCCTGGTACAGCTACA
AGGGTGAAAAGATTGGTCAGGGCAAGGATAATGCCCGCGAATACCTGCGCGAGCATGCTGACATTGCCAATGAAATTGAC
GCCAAAATCCGCGCCAATTCCAATCTGGCCGGTGCCGCCATGACCGTCGCCCCGGATGACGACGGCGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.219

98.256

0.759
  recA Acinetobacter baylyi ADP1

72.384

100

0.724
  recA Acinetobacter baumannii D1279779

72.595

99.709

0.724
  recA Ralstonia pseudosolanacearum GMI1000

79.743

90.407

0.721
  recA Neisseria gonorrhoeae MS11

73.294

97.965

0.718
  recA Neisseria gonorrhoeae MS11

73.294

97.965

0.718
  recA Neisseria gonorrhoeae strain FA1090

73.294

97.965

0.718
  recA Glaesserella parasuis strain SC1401

70.977

100

0.718
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

94.186

0.706
  recA Vibrio cholerae strain A1552

75

94.186

0.706
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.638

100

0.648
  recA Bacillus subtilis subsp. subtilis str. 168

67.584

95.058

0.642
  recA Helicobacter pylori strain NCTC11637

63.478

100

0.637
  recA Helicobacter pylori 26695

62.899

100

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

95.349

0.631
  recA Latilactobacillus sakei subsp. sakei 23K

61.19

100

0.628
  recA Streptococcus pneumoniae D39

64.134

95.64

0.613
  recA Streptococcus pneumoniae Rx1

64.134

95.64

0.613
  recA Streptococcus pneumoniae R6

64.134

95.64

0.613
  recA Streptococcus pneumoniae TIGR4

64.134

95.64

0.613
  recA Streptococcus pyogenes NZ131

63.804

94.767

0.605
  recA Streptococcus mitis NCTC 12261

63.222

95.64

0.605
  recA Streptococcus mitis SK321

62.918

95.64

0.602
  recA Streptococcus mutans UA159

62.349

96.512

0.602
  recA Lactococcus lactis subsp. cremoris KW2

61.398

95.64

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.494

94.186

0.57

Multiple sequence alignment