Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F3I00_RS07020 Genome accession   NZ_CP044412
Coordinates   1372734..1373828 (-) Length   364 a.a.
NCBI ID   WP_020806707.1    Uniprot ID   A0A8A8L8R8
Organism   Lactobacillus sp. JM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367734..1378828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3I00_RS07000 (F3I00_07000) - 1367746..1369014 (-) 1269 WP_035425706.1 DEAD/DEAH box helicase family protein -
  F3I00_RS07005 (F3I00_07005) - 1369056..1369721 (+) 666 WP_020806704.1 YigZ family protein -
  F3I00_RS07010 (F3I00_07010) - 1369741..1370883 (-) 1143 WP_020806705.1 glycosyltransferase family 4 protein -
  F3I00_RS07015 (F3I00_07015) rny 1370984..1372606 (-) 1623 WP_020806706.1 ribonuclease Y -
  F3I00_RS07020 (F3I00_07020) recA 1372734..1373828 (-) 1095 WP_020806707.1 recombinase RecA Machinery gene
  F3I00_RS07025 (F3I00_07025) pgsA 1373990..1374553 (-) 564 WP_020806708.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F3I00_RS07030 (F3I00_07030) - 1374553..1375566 (-) 1014 WP_020806709.1 RodZ family helix-turn-helix domain-containing protein -
  F3I00_RS07035 (F3I00_07035) ymfI 1375625..1376353 (-) 729 WP_020806710.1 elongation factor P 5-aminopentanone reductase -
  F3I00_RS07040 (F3I00_07040) - 1376354..1377589 (-) 1236 WP_020806711.1 pitrilysin family protein -
  F3I00_RS07045 (F3I00_07045) - 1377586..1378800 (-) 1215 WP_039156050.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39362.89 Da        Isoelectric Point: 6.7608

>NTDB_id=389845 F3I00_RS07020 WP_020806707.1 1372734..1373828(-) (recA) [Lactobacillus sp. JM1]
MAKDDKKKALDIALKKIEKDFGKGAVMRMGEKVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMG
DSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYDEVK
EKVRKAYGIDSKAIEERENPEKIKQEKEAAAVKDDASNEKSKKN

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=389845 F3I00_RS07020 WP_020806707.1 1372734..1373828(-) (recA) [Lactobacillus sp. JM1]
TTGGCTAAAGATGATAAAAAGAAGGCCTTAGACATTGCCTTAAAGAAGATTGAAAAAGACTTTGGAAAAGGCGCAGTTAT
GCGTATGGGTGAAAAAGTAGACACTCAAATTTCCACTATTCCTTCCGGTTCACTAGCTTTAGATGCTGCTCTTGGAGTTG
GTGGTTATCCACGTGGACGAATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCACTTCATGCTGTT
GCAGAAGTTCAAAAGCGTGGCGGAACGGCTGCATACATTGATGCTGAAAATGCTATGGATCCGGCTTATGCTGAGGCATT
AGGTGTAGATATTGATTCATTAATTTTATCTCAACCAAATACTGGTGAAGAAGGATTACAAATTGCAGATACTTTGATTG
CCAGTGGTGCAATTGATATTTTGGTTGTGGATTCAGTTGCTGCATTAGTACCACGAGCTGAAATTGATGGTGATATGGGA
GACTCTCACGTTGGTTTACAGGCGAGATTAATGAGTCAGGCCTTGCGGAAACTTTCTGGAAATATTTCTAAGACGAAGAC
AATCGCCGTTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGAAATCCAGAAACTACTCCTGGTGGTCGCG
CTTTAAAGTTCTACTCTACTATTCGATTAGAAGTTCGTCGCGCAGAACAGATCAAGCAAGGATCTGATGTAATTGGTAAC
CGTGTTAAGCTAAAGGTTGTTAAGAACAAGGTTGCTCCACCATTTAAAGTGGCAGAAGTTGATATCATGTACGGTAAAGG
AATTTCTCAAACTGGTGAATTAATTGATATGGCTGCTGACAAGGATATCATTAAGAAGGCTGGTTCATGGTATTCATACG
GTGATGATCGAATTGGTCAGGGACGTGAGAATGCTAAGCAGTACCTTGAAGAACATCCAGATGTGTATGATGAAGTAAAA
GAAAAAGTGCGTAAAGCATATGGAATTGATTCTAAAGCTATTGAAGAGCGTGAAAACCCCGAAAAAATAAAGCAGGAGAA
GGAAGCAGCAGCGGTAAAAGATGATGCTTCCAATGAGAAAAGTAAAAAAAACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8A8L8R8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.602

98.626

0.755
  recA Bacillus subtilis subsp. subtilis str. 168

72.727

90.659

0.659
  recA Streptococcus mutans UA159

65.205

100

0.654
  recA Streptococcus pneumoniae TIGR4

66.011

97.802

0.646
  recA Streptococcus pneumoniae R6

66.011

97.802

0.646
  recA Streptococcus pneumoniae Rx1

66.011

97.802

0.646
  recA Streptococcus pneumoniae D39

66.011

97.802

0.646
  recA Streptococcus pyogenes NZ131

70.517

90.385

0.637
  recA Streptococcus mitis NCTC 12261

67.544

93.956

0.635
  recA Streptococcus mitis SK321

68.693

90.385

0.621
  recA Lactococcus lactis subsp. cremoris KW2

67.477

90.385

0.61
  recA Neisseria gonorrhoeae strain FA1090

61.562

91.484

0.563
  recA Neisseria gonorrhoeae MS11

61.562

91.484

0.563
  recA Neisseria gonorrhoeae MS11

61.562

91.484

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

90.11

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

88.736

0.533
  recA Acinetobacter baumannii D1279779

56.725

93.956

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.537

90.11

0.527
  recA Helicobacter pylori 26695

56.805

92.857

0.527
  recA Helicobacter pylori strain NCTC11637

56.805

92.857

0.527
  recA Acinetobacter baylyi ADP1

59.006

88.462

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.693

96.703

0.519
  recA Vibrio cholerae strain A1552

53.693

96.703

0.519
  recA Pseudomonas stutzeri DSM 10701

57.321

88.187

0.505
  recA Glaesserella parasuis strain SC1401

55.287

90.934

0.503
  recA Ralstonia pseudosolanacearum GMI1000

57.827

85.989

0.497

Multiple sequence alignment