Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F5J09_RS12725 Genome accession   NZ_CP044361
Coordinates   2490327..2491520 (-) Length   397 a.a.
NCBI ID   WP_003600065.1    Uniprot ID   A0A422LRX5
Organism   Lacticaseibacillus paracasei strain TD 062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2485327..2496520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5J09_RS12700 (F5J09_13170) - 2485540..2486226 (-) 687 WP_003567833.1 histidine phosphatase family protein -
  F5J09_RS12705 (F5J09_13175) - 2486271..2487083 (-) 813 WP_003567836.1 Cof-type HAD-IIB family hydrolase -
  F5J09_RS12710 (F5J09_13180) - 2487180..2487662 (+) 483 WP_003600063.1 ribonuclease H -
  F5J09_RS12715 (F5J09_13185) - 2487668..2488570 (-) 903 WP_003567840.1 LysR family transcriptional regulator -
  F5J09_RS12720 (F5J09_13190) - 2488820..2490022 (+) 1203 WP_003600064.1 PLP-dependent aminotransferase family protein -
  F5J09_RS12725 (F5J09_13195) recA 2490327..2491520 (-) 1194 WP_003600065.1 recombinase RecA Machinery gene
  F5J09_RS12730 (F5J09_13200) - 2491921..2492619 (+) 699 WP_003567846.1 DUF554 domain-containing protein -
  F5J09_RS12740 (F5J09_13210) - 2492777..2493250 (-) 474 WP_003603493.1 hypothetical protein -
  F5J09_RS12745 (F5J09_13215) - 2493267..2494196 (-) 930 WP_003561810.1 IS30-like element ISLpl1 family transposase -
  F5J09_RS14915 (F5J09_13225) - 2494494..2494784 (-) 291 WP_225354518.1 hypothetical protein -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43030.75 Da        Isoelectric Point: 5.1689

>NTDB_id=389736 F5J09_RS12725 WP_003600065.1 2490327..2491520(-) (recA) [Lacticaseibacillus paracasei strain TD 062]
MAKKTTAKNDNTKSDATDRDTELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEVYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKR
GQQVKDGKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERLGQGLV
NASHYLDEHLEISKEIEEKIREQVAPKKPEEADEKQDDKKDDQASADKKTEKTTTTDTEKKSDKKDDPASFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=389736 F5J09_RS12725 WP_003600065.1 2490327..2491520(-) (recA) [Lacticaseibacillus paracasei strain TD 062]
ATGGCTAAGAAAACGACCGCAAAGAATGATAATACTAAATCCGATGCTACAGATCGCGATACCGAACTAGAAAAAGCCCT
TCAGAAGATCAAGAAAGCCTTTGGTGAAGGTGCCGTCATGAAGATGGGCGATCGACCGGAACTGAAGGTTGATGTCGTCT
CAACAGGCATTTTATCCTTGGATCTTGCACTCGGTGTCGGCGGGTTACCGCGTGGCCGAATCGTTGAAGTTTATGGTCCT
GAAAGTACCGGGAAAACAACGATTGCGTTGCAGACTATTGCCGAATTGCAGAAATCAGGCGGCAAGGCGGCTTACATTGA
CGCCGAAAATGCGATGGACCCGAAGTATGCGGCGGAACTTGGCGTAAATATTGACGACTTACTGTTGTCTCAGCCAAACT
CTGGGGAACAGGGGCTTGAAATTGCTGAAATGCTGATTGAATCAGCGGCTGTTGATATTGTTGTCATTGACTCTGTCGCA
GCCTTGGTTCCCAAGGCTGAAATTGAAGGGGCCATCGGGGATAGCCATGTGGGCTTGCAAGCCCGGCTGATGTCGCAGGC
ACTGCGGAAGATGGCCGGTTCGATCAATAATACCAATACGCTGGTTATTTTCATTAACCAATTGCGTGAAAAAGTTGGCG
TGATGTTTGGCAACCCAGAAGTGACACCGGGCGGTCGTGCCTTGAAATTCTATGCGTCTGTGCGGATTGAAGTCAAGCGT
GGGCAGCAGGTGAAAGACGGCAAAGATGTTGTCGGCTTCGCTAGCAAACTGAAAGTCACTAAGAATAAGGTCGCACCGCC
GTTTAAATCGGTTGAAACCACGATGTCATTTGGTCACGGAATTGAACACAATACCGATATGATTAACTTGGCAACCGATA
AAGACAATGACATTGACGTCATCACCAAGTCTGGCTCTTGGTATAACTATGGCAAGGAACGTTTGGGCCAAGGACTTGTC
AACGCATCTCACTACTTGGATGAACATCTGGAAATTTCTAAGGAAATCGAAGAAAAGATTCGTGAACAAGTTGCGCCAAA
GAAGCCTGAAGAAGCCGATGAGAAGCAGGATGATAAGAAAGACGATCAGGCATCTGCTGATAAAAAGACCGAAAAGACAA
CGACCACTGATACTGAAAAGAAATCCGACAAGAAAGATGACCCTGCCAGCTTCGGGGTTGATCGGTTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A422LRX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

56.878

95.214

0.542
  recA Streptococcus mitis NCTC 12261

56.878

95.214

0.542
  recA Streptococcus pneumoniae TIGR4

57.221

92.443

0.529
  recA Streptococcus pneumoniae D39

57.221

92.443

0.529
  recA Streptococcus pneumoniae R6

57.221

92.443

0.529
  recA Streptococcus pneumoniae Rx1

57.221

92.443

0.529
  recA Streptococcus mutans UA159

56.3

93.955

0.529
  recA Streptococcus pyogenes NZ131

59.42

86.902

0.516
  recA Latilactobacillus sakei subsp. sakei 23K

62.963

81.612

0.514
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

82.368

0.509
  recA Lactococcus lactis subsp. cremoris KW2

58.892

86.398

0.509
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.305

85.894

0.484
  recA Pseudomonas stutzeri DSM 10701

55.652

86.902

0.484
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.39

89.169

0.476
  recA Acinetobacter baylyi ADP1

54.386

86.146

0.469
  recA Glaesserella parasuis strain SC1401

53.448

87.657

0.469
  recA Acinetobacter baumannii D1279779

53.623

86.902

0.466
  recA Ralstonia pseudosolanacearum GMI1000

58.413

79.345

0.463
  recA Neisseria gonorrhoeae MS11

57.325

79.093

0.453
  recA Neisseria gonorrhoeae strain FA1090

57.325

79.093

0.453
  recA Neisseria gonorrhoeae MS11

57.325

79.093

0.453
  recA Vibrio cholerae O1 biovar El Tor strain E7946

52.905

82.368

0.436
  recA Vibrio cholerae strain A1552

52.905

82.368

0.436
  recA Helicobacter pylori strain NCTC11637

51.368

82.872

0.426
  recA Helicobacter pylori 26695

51.368

82.872

0.426
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.16

81.612

0.426

Multiple sequence alignment