Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F5J09_RS09955 Genome accession   NZ_CP044361
Coordinates   1995735..1996796 (-) Length   353 a.a.
NCBI ID   WP_016386176.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain TD 062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1990735..2001796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5J09_RS09940 (F5J09_10280) - 1991631..1992281 (+) 651 WP_003601729.1 YigZ family protein -
  F5J09_RS09945 (F5J09_10285) rny 1992375..1993946 (-) 1572 WP_003657913.1 ribonuclease Y -
  F5J09_RS09950 (F5J09_10290) - 1994229..1995161 (-) 933 WP_225441965.1 ISL3 family transposase -
  F5J09_RS14845 - 1995148..1995498 (-) 351 WP_016379056.1 transposase family protein -
  F5J09_RS09955 (F5J09_10295) recA 1995735..1996796 (-) 1062 WP_016386176.1 recombinase RecA Machinery gene
  F5J09_RS09960 (F5J09_10300) cinA 1996853..1998094 (-) 1242 WP_003601723.1 competence/damage-inducible protein A Machinery gene
  F5J09_RS09965 (F5J09_10310) pgsA 1998510..1999103 (-) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F5J09_RS09970 (F5J09_10315) - 1999100..2000038 (-) 939 WP_003601721.1 helix-turn-helix domain-containing protein -
  F5J09_RS09975 (F5J09_10320) ymfI 2000125..2000853 (-) 729 WP_003601719.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37791.97 Da        Isoelectric Point: 5.8234

>NTDB_id=389730 F5J09_RS09955 WP_016386176.1 1995735..1996796(-) (recA) [Lacticaseibacillus paracasei strain TD 062]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKSGSWYTYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=389730 F5J09_RS09955 WP_016386176.1 1995735..1996796(-) (recA) [Lacticaseibacillus paracasei strain TD 062]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCAGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAATCAGGTTCATGGTACACGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.251

98.3

0.779
  recA Bacillus subtilis subsp. subtilis str. 168

74.462

92.068

0.686
  recA Streptococcus mitis SK321

67.63

98.017

0.663
  recA Streptococcus mutans UA159

67.63

98.017

0.663
  recA Streptococcus mitis NCTC 12261

67.63

98.017

0.663
  recA Streptococcus pyogenes NZ131

70.303

93.484

0.657
  recA Streptococcus pneumoniae Rx1

69.184

93.768

0.649
  recA Streptococcus pneumoniae D39

69.184

93.768

0.649
  recA Streptococcus pneumoniae R6

69.184

93.768

0.649
  recA Streptococcus pneumoniae TIGR4

69.184

93.768

0.649
  recA Lactococcus lactis subsp. cremoris KW2

68.882

93.768

0.646
  recA Ralstonia pseudosolanacearum GMI1000

65.815

88.669

0.584
  recA Neisseria gonorrhoeae strain FA1090

62.691

92.635

0.581
  recA Neisseria gonorrhoeae MS11

62.691

92.635

0.581
  recA Neisseria gonorrhoeae MS11

62.691

92.635

0.581
  recA Acinetobacter baylyi ADP1

58.14

97.45

0.567
  recA Pseudomonas stutzeri DSM 10701

58.529

96.317

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

91.501

0.558
  recA Acinetobacter baumannii D1279779

60.748

90.935

0.552
  recA Glaesserella parasuis strain SC1401

55.114

99.717

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.327

92.635

0.55
  recA Helicobacter pylori strain NCTC11637

58.485

93.484

0.547
  recA Helicobacter pylori 26695

58.485

93.484

0.547
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.502

90.935

0.541
  recA Vibrio cholerae strain A1552

59.502

90.935

0.541
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.575

92.635

0.524

Multiple sequence alignment