Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ELI_RS09020 Genome accession   NC_014624
Coordinates   1932213..1933373 (+) Length   386 a.a.
NCBI ID   WP_013380374.1    Uniprot ID   A0A6N3GWW5
Organism   Eubacterium callanderi     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927213..1938373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELI_RS09000 (ELI_2066) rimO 1927752..1929092 (+) 1341 WP_013380370.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ELI_RS09005 (ELI_2067) pgsA 1929079..1929624 (+) 546 WP_013380371.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ELI_RS09010 (ELI_2068) - 1929697..1930707 (+) 1011 WP_013380372.1 nucleoid-associated protein -
  ELI_RS09015 (ELI_2069) - 1930901..1932142 (+) 1242 WP_013380373.1 competence/damage-inducible protein A -
  ELI_RS09020 (ELI_2070) recA 1932213..1933373 (+) 1161 WP_013380374.1 recombinase RecA Machinery gene
  ELI_RS09025 (ELI_2071) - 1933387..1933578 (+) 192 WP_013380375.1 hypothetical protein -
  ELI_RS09030 (ELI_2072) dinB 1933697..1934929 (+) 1233 WP_013380376.1 DNA polymerase IV -
  ELI_RS09035 (ELI_2073) - 1934982..1935704 (-) 723 WP_041690204.1 MIP/aquaporin family protein -
  ELI_RS09040 (ELI_2074) - 1935999..1937549 (-) 1551 WP_013380378.1 flotillin family protein -
  ELI_RS09045 (ELI_2075) - 1937581..1937817 (-) 237 WP_013380379.1 hypothetical protein -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 42182.90 Da        Isoelectric Point: 4.5949

>NTDB_id=38707 ELI_RS09020 WP_013380374.1 1932213..1933373(+) (recA) [Eubacterium callanderi]
MAEKRKPLEKVEEKTDNSAKQEALNAALKNIEKTFGKGAVMRLGDESAKMDVDVISTSSIGIDMALGIGGVPRGRIIEIY
GPESSGKTTIALHIVAEAQKAGGNAAFIDAEHALDPVYAKALGVDVDNLIVSQPDTGEQALEILEALVRSGAIDVAVVDS
VAALVPRAEIDGEMGDSHVGLQARLMSQALRKLAGIIKKSNTAAIFINQLREKVGVMYGNPEVTTGGRALKFYSSVRMDI
RRIETLKKGTDMIGNRTRAKIVKNKMAPPFKTAEFDIMYGEGISREGDILDMAVELNIIKKSGSWFSYGEERLGQGRDKV
KEYLKENPEFADAVEQKIRDHFAKKDEPEVPEEGSEALTKDQAEMAAELSDEDMDEFFELNEFEEE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=38707 ELI_RS09020 WP_013380374.1 1932213..1933373(+) (recA) [Eubacterium callanderi]
ATGGCTGAAAAACGCAAACCATTAGAAAAAGTAGAAGAAAAAACTGACAACAGCGCAAAGCAGGAAGCCTTAAACGCTGC
TTTAAAGAATATTGAAAAAACCTTTGGAAAGGGCGCCGTCATGCGTCTTGGAGACGAGAGTGCGAAGATGGACGTCGACG
TTATCTCCACCTCATCCATCGGTATTGATATGGCGCTTGGAATTGGCGGGGTTCCCCGTGGCCGGATCATTGAGATCTAC
GGACCAGAATCCTCCGGTAAAACCACTATTGCCCTTCATATTGTGGCGGAAGCCCAAAAGGCCGGAGGCAACGCGGCCTT
TATCGATGCCGAACATGCGCTCGATCCCGTATACGCAAAAGCCCTCGGTGTGGATGTGGATAACCTGATTGTATCCCAGC
CGGACACAGGTGAACAGGCCCTTGAAATTCTTGAAGCCCTGGTGCGGAGCGGGGCCATCGATGTGGCCGTTGTGGACTCT
GTCGCGGCTCTGGTACCCCGTGCGGAAATTGATGGGGAAATGGGGGACTCCCATGTTGGGCTTCAGGCGAGACTGATGTC
CCAGGCCCTCCGAAAGCTGGCAGGGATTATCAAAAAGTCCAATACCGCGGCGATCTTTATTAACCAGCTGCGCGAGAAGG
TTGGGGTTATGTACGGAAATCCAGAGGTTACAACTGGCGGCCGTGCTTTGAAATTCTATTCCTCTGTCCGGATGGACATC
CGCAGAATTGAAACTTTGAAAAAAGGAACCGATATGATCGGGAACCGTACCCGTGCTAAGATTGTAAAGAACAAAATGGC
GCCGCCGTTTAAAACTGCCGAGTTTGATATCATGTACGGCGAGGGTATCTCCAGAGAAGGGGATATTCTGGACATGGCGG
TTGAGCTGAATATTATAAAAAAATCCGGCTCATGGTTCTCCTACGGTGAGGAACGCCTGGGGCAGGGGCGTGACAAGGTG
AAGGAATACCTTAAAGAAAACCCTGAATTTGCCGATGCGGTTGAACAGAAAATCCGTGATCATTTTGCCAAGAAGGATGA
GCCCGAAGTGCCAGAGGAAGGCTCGGAAGCTCTGACCAAGGATCAGGCTGAAATGGCCGCGGAATTATCTGATGAGGATA
TGGATGAGTTCTTTGAGCTGAATGAGTTCGAGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3GWW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

67.879

85.492

0.58
  recA Streptococcus mutans UA159

58.421

98.446

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

84.456

0.573
  recA Streptococcus pneumoniae TIGR4

60.833

93.264

0.567
  recA Streptococcus pneumoniae Rx1

60.833

93.264

0.567
  recA Streptococcus pneumoniae D39

60.833

93.264

0.567
  recA Streptococcus pneumoniae R6

60.833

93.264

0.567
  recA Helicobacter pylori strain NCTC11637

64.012

87.824

0.562
  recA Helicobacter pylori 26695

64.012

87.824

0.562
  recA Streptococcus mitis NCTC 12261

60.674

92.228

0.56
  recA Streptococcus pyogenes NZ131

62.139

89.637

0.557
  recA Streptococcus mitis SK321

60.393

92.228

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.099

88.86

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.887

91.71

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.874

86.528

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.615

84.197

0.544
  recA Glaesserella parasuis strain SC1401

60.29

89.378

0.539
  recA Vibrio cholerae strain A1552

60.947

87.565

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.947

87.565

0.534
  recA Acinetobacter baylyi ADP1

62.121

85.492

0.531
  recA Neisseria gonorrhoeae MS11

65.372

80.052

0.523
  recA Neisseria gonorrhoeae MS11

65.372

80.052

0.523
  recA Neisseria gonorrhoeae strain FA1090

65.372

80.052

0.523
  recA Acinetobacter baumannii D1279779

61.92

83.679

0.518
  recA Ralstonia pseudosolanacearum GMI1000

63.898

81.088

0.518
  recA Pseudomonas stutzeri DSM 10701

62.5

82.902

0.518

Multiple sequence alignment