Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E0W69_RS16795 Genome accession   NZ_CP044016
Coordinates   3931410..3932444 (-) Length   344 a.a.
NCBI ID   WP_131331193.1    Uniprot ID   A0A5P2G4X1
Organism   Rhizosphaericola mali strain B3-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3926410..3937444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0W69_RS16770 (E0W69_016770) - 3927587..3928807 (+) 1221 WP_191967891.1 TlpA disulfide reductase family protein -
  E0W69_RS16775 (E0W69_016775) - 3928938..3929606 (+) 669 WP_131331189.1 DUF1287 domain-containing protein -
  E0W69_RS16780 (E0W69_016780) - 3929626..3929952 (-) 327 WP_131331190.1 multidrug efflux SMR transporter -
  E0W69_RS16785 (E0W69_016785) - 3929986..3930909 (-) 924 WP_131331191.1 alpha/beta hydrolase -
  E0W69_RS16790 (E0W69_016790) - 3930983..3931351 (+) 369 WP_131331192.1 hypothetical protein -
  E0W69_RS16795 (E0W69_016795) recA 3931410..3932444 (-) 1035 WP_131331193.1 recombinase RecA Machinery gene
  E0W69_RS16800 (E0W69_016800) - 3932531..3932989 (-) 459 WP_131331194.1 META domain-containing protein -
  E0W69_RS16805 (E0W69_016805) - 3933069..3934100 (-) 1032 WP_131331195.1 aldo/keto reductase -
  E0W69_RS16810 (E0W69_016810) - 3934184..3935497 (-) 1314 WP_131331196.1 gluconate:H+ symporter -
  E0W69_RS16815 (E0W69_016815) - 3935591..3936382 (+) 792 WP_131331197.1 amidohydrolase -
  E0W69_RS16820 (E0W69_016820) - 3936375..3936896 (-) 522 WP_131331198.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36928.61 Da        Isoelectric Point: 5.3258

>NTDB_id=387044 E0W69_RS16795 WP_131331193.1 3931410..3932444(-) (recA) [Rhizosphaericola mali strain B3-10]
MSNADKLKALKLTMDKIDKDFGKGSVMMMNEKAHTEIEVISTGSIGLDTALGVGGLPKGRIIEIYGPESSGKTTLATHVI
AEAQKKGGMCAIVDAEHAFDSIYAKKLGVDVDNLLISQPDYGEQALEIADRLILSGALDVVVIDSVAALVPKGELEGEMG
DSKMGLQARLMSQALRKLTATISKTNTICIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRAAQIKDGDTVVGN
RVKVKVVKNKVAPPFRSSEFDIVYGQGISKVGEIIDMGVELGIVQKSGSWFSYDTNKLGQGREAVKQLIMDNPELATEIE
GKIRVKLNGTVLPADESIGAIEED

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=387044 E0W69_RS16795 WP_131331193.1 3931410..3932444(-) (recA) [Rhizosphaericola mali strain B3-10]
ATGAGCAATGCAGATAAATTGAAAGCCCTCAAGCTGACAATGGATAAAATAGATAAAGATTTTGGTAAAGGAAGTGTGAT
GATGATGAATGAAAAAGCACATACTGAAATTGAAGTAATCTCTACTGGCTCTATTGGTTTGGATACTGCTCTCGGTGTAG
GTGGTTTACCTAAAGGAAGAATTATTGAAATATATGGACCAGAATCTTCTGGTAAAACGACTTTGGCTACGCACGTGATT
GCAGAGGCGCAAAAGAAAGGTGGCATGTGTGCGATCGTCGATGCTGAGCATGCATTTGATAGTATCTATGCAAAAAAATT
AGGTGTTGATGTCGATAATTTGTTGATTTCTCAACCAGATTATGGTGAGCAAGCATTGGAAATTGCCGACCGTTTGATTC
TTTCTGGAGCTTTGGATGTTGTGGTAATTGACTCTGTGGCGGCTTTGGTTCCTAAAGGGGAATTGGAAGGTGAAATGGGT
GATAGCAAAATGGGCTTGCAAGCAAGATTGATGAGCCAAGCTTTGCGTAAATTGACAGCTACAATTAGTAAAACAAATAC
CATCTGTATTTTCATCAATCAATTGAGAGAGAAAATTGGTGTTATGTTTGGTAATCCAGAAACTACAACGGGTGGTAACG
CATTGAAATTCTATGCCTCTGTTCGTTTGGATATACGTCGTGCTGCACAGATTAAAGATGGTGATACCGTTGTCGGTAAC
CGTGTAAAAGTAAAAGTTGTAAAAAATAAAGTTGCACCTCCATTTAGAAGTTCTGAATTTGATATCGTCTATGGACAAGG
GATCAGCAAAGTCGGTGAAATTATTGATATGGGTGTTGAATTAGGAATTGTTCAAAAAAGCGGTAGTTGGTTTAGTTACG
ACACAAACAAATTAGGACAGGGACGTGAAGCGGTAAAACAGCTTATCATGGACAATCCTGAATTAGCTACAGAAATCGAA
GGTAAAATCCGAGTAAAATTAAATGGCACTGTTTTACCTGCGGATGAATCTATCGGCGCAATTGAAGAGGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P2G4X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.675

96.512

0.663
  recA Ralstonia pseudosolanacearum GMI1000

66.159

95.349

0.631
  recA Helicobacter pylori 26695

62.281

99.419

0.619
  recA Helicobacter pylori strain NCTC11637

62.281

99.419

0.619
  recA Neisseria gonorrhoeae MS11

65.337

94.767

0.619
  recA Neisseria gonorrhoeae strain FA1090

65.337

94.767

0.619
  recA Neisseria gonorrhoeae MS11

65.337

94.767

0.619
  recA Pseudomonas stutzeri DSM 10701

64.396

93.895

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

64.486

93.314

0.602
  recA Acinetobacter baumannii D1279779

61.424

97.965

0.602
  recA Acinetobacter baylyi ADP1

62.539

93.895

0.587
  recA Glaesserella parasuis strain SC1401

62.733

93.605

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.928

93.314

0.587
  recA Streptococcus mitis NCTC 12261

60.671

95.349

0.578
  recA Streptococcus mitis SK321

60.671

95.349

0.578
  recA Streptococcus mutans UA159

57.849

100

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

58.929

97.674

0.576
  recA Streptococcus pneumoniae R6

60.366

95.349

0.576
  recA Streptococcus pneumoniae TIGR4

60.366

95.349

0.576
  recA Streptococcus pneumoniae Rx1

60.366

95.349

0.576
  recA Streptococcus pneumoniae D39

60.366

95.349

0.576
  recA Streptococcus pyogenes NZ131

60.55

95.058

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.938

93.023

0.567
  recA Vibrio cholerae strain A1552

60.938

93.023

0.567
  recA Lactococcus lactis subsp. cremoris KW2

59.077

94.477

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.812

93.023

0.538

Multiple sequence alignment