Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   STAUR_RS11010 Genome accession   NC_014623
Coordinates   2762384..2763415 (-) Length   343 a.a.
NCBI ID   WP_013375117.1    Uniprot ID   E3FCC4
Organism   Stigmatella aurantiaca DW4/3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2757384..2768415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAUR_RS10990 (STAUR_2239) pssA 2758236..2759087 (+) 852 WP_013375114.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  STAUR_RS10995 (STAUR_2240) - 2759145..2760410 (+) 1266 WP_002610384.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  STAUR_RS11000 (STAUR_2241) - 2760407..2761828 (+) 1422 WP_013375115.1 hypothetical protein -
  STAUR_RS11005 (STAUR_2242) - 2761884..2762387 (+) 504 WP_013375116.1 DUF1285 domain-containing protein -
  STAUR_RS11010 (STAUR_2243) recA 2762384..2763415 (-) 1032 WP_013375117.1 recombinase RecA Machinery gene
  STAUR_RS11015 (STAUR_2244) - 2763604..2764407 (-) 804 WP_013375118.1 lysophospholipid acyltransferase family protein -
  STAUR_RS11020 (STAUR_2245) - 2764557..2765918 (+) 1362 WP_037582976.1 NAD(P)/FAD-dependent oxidoreductase -
  STAUR_RS11025 (STAUR_2246) - 2765929..2767530 (-) 1602 WP_002610347.1 YifB family Mg chelatase-like AAA ATPase -
  STAUR_RS11030 (STAUR_2247) - 2767691..2768341 (+) 651 WP_002610361.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36178.52 Da        Isoelectric Point: 7.0690

>NTDB_id=38695 STAUR_RS11010 WP_013375117.1 2762384..2763415(-) (recA) [Stigmatella aurantiaca DW4/3-1]
MNKVAEKLKAVAAAVAAIEKQFGKGAVMALGGEAQEQKVAVIASGSVSLDRALGVGGYPRGRVVELFGNESSGKTSLSLH
AIAQVQASGGVAAFIDAEHALDVNYARKLGVRVEELLISQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEIRRTGNLKEGESII
GTRARVKVVKNKLAPPFQEAEFDLLYGVGIHRAGEVLDLGVQLGFIEKSGSHFSLRGERIGQGRERATDWLREHPQALEA
LATELAGTAPPLAALPGPAEAVA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=38695 STAUR_RS11010 WP_013375117.1 2762384..2763415(-) (recA) [Stigmatella aurantiaca DW4/3-1]
ATGAACAAGGTGGCGGAGAAGCTGAAGGCAGTGGCGGCAGCGGTGGCGGCAATCGAGAAGCAGTTCGGCAAGGGGGCGGT
GATGGCGCTGGGCGGCGAGGCGCAGGAGCAGAAGGTGGCGGTCATCGCATCGGGCTCGGTGAGCCTGGACCGGGCCCTGG
GGGTGGGCGGCTACCCTCGTGGACGGGTGGTGGAGCTCTTCGGCAACGAGTCCTCTGGGAAGACGAGCCTCAGCTTGCAC
GCCATCGCGCAGGTGCAGGCCTCGGGCGGGGTGGCGGCGTTCATCGACGCCGAGCACGCGCTGGACGTCAACTACGCACG
CAAGCTGGGGGTGCGCGTGGAGGAGCTGCTCATCTCTCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCACCGAGCAGC
TCGTGCGCTCCGGGGCGGTGGACCTCATCGTGGTGGACTCGGTGGCGGCCCTGGTGCCTCGCGCGGAGATCGAAGGCGAG
ATGGGGGATGCGCACATGGGCGTGCAGGCCCGGCTGATGAGCCAAGCCCTGCGCAAGCTCACCGGCGCGGTGAGCCGCTC
AGGCACGTGCATCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAGACGACCACGGGCG
GCAACGCGCTGAAGTTCTACTCATCGGTGCGGCTGGAGATCCGCCGCACGGGCAACCTCAAGGAGGGCGAGAGCATCATC
GGCACGCGCGCGCGCGTGAAGGTGGTGAAGAACAAGCTGGCGCCCCCCTTCCAGGAGGCGGAGTTCGATCTGTTGTACGG
CGTGGGCATCCACCGCGCGGGGGAGGTGCTGGACCTGGGGGTCCAACTGGGCTTCATCGAGAAGTCCGGCAGCCACTTCA
GCCTGCGTGGGGAGCGGATTGGCCAGGGCCGCGAGCGGGCCACCGACTGGCTGCGCGAACATCCCCAGGCCCTGGAGGCC
CTGGCCACCGAGCTGGCGGGGACGGCCCCCCCCCTGGCCGCGCTGCCCGGACCCGCCGAGGCGGTGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E3FCC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

67.308

90.962

0.612
  recA Neisseria gonorrhoeae MS11

66.238

90.671

0.601
  recA Neisseria gonorrhoeae strain FA1090

66.238

90.671

0.601
  recA Neisseria gonorrhoeae MS11

66.238

90.671

0.601
  recA Pseudomonas stutzeri DSM 10701

65.161

90.379

0.589
  recA Glaesserella parasuis strain SC1401

60.843

96.793

0.589
  recA Vibrio cholerae strain A1552

63.009

93.003

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.009

93.003

0.586
  recA Acinetobacter baylyi ADP1

64.516

90.379

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

63.987

90.671

0.58
  recA Acinetobacter baumannii D1279779

62.857

91.837

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

62.783

90.087

0.566
  recA Helicobacter pylori 26695

59.938

93.878

0.563
  recA Helicobacter pylori strain NCTC11637

59.938

93.878

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.589

95.044

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.093

90.671

0.554
  recA Streptococcus pyogenes NZ131

58.75

93.294

0.548
  recA Streptococcus mutans UA159

58.438

93.294

0.545
  recA Lactococcus lactis subsp. cremoris KW2

57.632

93.586

0.539
  recA Streptococcus pneumoniae D39

56.615

94.752

0.536
  recA Streptococcus pneumoniae R6

56.615

94.752

0.536
  recA Streptococcus pneumoniae TIGR4

56.615

94.752

0.536
  recA Streptococcus pneumoniae Rx1

56.615

94.752

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.013

90.962

0.528
  recA Streptococcus mitis SK321

56.918

92.711

0.528
  recA Streptococcus mitis NCTC 12261

56.386

93.586

0.528

Multiple sequence alignment