Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   STAUR_RS10565 Genome accession   NC_014623
Coordinates   2649224..2650306 (+) Length   360 a.a.
NCBI ID   WP_002615377.1    Uniprot ID   Q08Y00
Organism   Stigmatella aurantiaca DW4/3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2644224..2655306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAUR_RS10535 (STAUR_2147) - 2645358..2646347 (-) 990 WP_002617134.1 serine/threonine-protein kinase -
  STAUR_RS10540 (STAUR_2148) - 2646413..2646649 (-) 237 WP_013375059.1 hypothetical protein -
  STAUR_RS10545 (STAUR_2149) - 2646646..2647140 (-) 495 WP_002617154.1 DUF3106 domain-containing protein -
  STAUR_RS10550 (STAUR_2150) - 2647140..2647604 (-) 465 WP_002617140.1 zf-HC2 domain-containing protein -
  STAUR_RS10555 (STAUR_2151) - 2647601..2648200 (-) 600 WP_037583945.1 sigma-70 family RNA polymerase sigma factor -
  STAUR_RS10560 (STAUR_2152) - 2648286..2649089 (+) 804 WP_013375062.1 hypothetical protein -
  STAUR_RS10565 (STAUR_2153) recA 2649224..2650306 (+) 1083 WP_002615377.1 recombinase RecA Machinery gene
  STAUR_RS10570 (STAUR_2154) - 2650472..2652583 (+) 2112 WP_232293538.1 alkaline phosphatase D family protein -
  STAUR_RS10575 (STAUR_2155) - 2652602..2653162 (+) 561 WP_013375064.1 GNAT family protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38996.77 Da        Isoelectric Point: 7.2953

>NTDB_id=38694 STAUR_RS10565 WP_002615377.1 2649224..2650306(+) (recA) [Stigmatella aurantiaca DW4/3-1]
MAVNSEKEKAIELAMSAVERQFGKGSIMRLGKDEPLTRDIQAISTGSISLDIALGVGGVPKGRIVEIFGPESSGKTTLCL
HIVAEAQKRGGICGYIDAEHALDVGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFAFKGERIGQGRENAKDYLREHPDTYK
EIEARVLEKYGVTKPAVAAVPDEPEPSSEGEKRPRVKAVK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=38694 STAUR_RS10565 WP_002615377.1 2649224..2650306(+) (recA) [Stigmatella aurantiaca DW4/3-1]
ATGGCCGTGAATTCAGAGAAGGAGAAGGCGATCGAGTTGGCGATGTCCGCTGTCGAGCGTCAGTTTGGGAAGGGTTCCAT
CATGCGGCTCGGCAAGGACGAGCCGCTGACACGTGACATTCAGGCCATCTCGACCGGATCCATCTCGCTCGACATCGCCC
TGGGTGTGGGCGGCGTTCCGAAGGGGCGCATCGTCGAGATCTTCGGACCGGAGTCTTCCGGAAAGACGACCTTGTGCCTT
CACATCGTCGCCGAGGCGCAGAAGCGGGGCGGTATCTGCGGCTACATCGACGCGGAGCACGCGCTGGACGTGGGCTACGC
CCGCAAGCTGGGCGTGCGGACCGACGACCTGCTGCTGAGCCAGCCGGACACGGGAGAGCAGGCGCTGGAGATCGCCGAGA
TGCTGGTGCGCTCGGGGGCCATCGATGTGCTGGTGGTGGACTCGGTGGCGGCCCTGGTGCCCAAGGCCGAACTCGAGGGC
GAGATGGGCGATGCGCACATGGGTGTGCAGGCGCGCCTGATGAGCCAGGCGTTGCGCAAGCTCACGGGCACCATCTCCAA
GAGCCAGACCTGCGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAGACGACCACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCCTGGACATCCGCCGCATCGGCGCCATCAAGAACGGCGAGAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCTCCCTTCAAGGAGGTGGAGTTCGACATCATGTA
CGGCACCGGCATCTCCCGGGAGGGAGACCTCATCGACTTGGCCTCCAACGAGAACATCGTCGAGAAGAGCGGCAGCTGGT
TCGCCTTCAAGGGCGAGCGCATCGGCCAGGGCCGGGAGAACGCGAAGGACTACTTGCGGGAGCATCCGGACACCTACAAG
GAGATCGAAGCCCGCGTCCTCGAGAAGTACGGCGTCACCAAGCCCGCGGTGGCGGCGGTGCCGGACGAGCCCGAGCCTTC
GAGTGAAGGGGAGAAGCGTCCGCGCGTGAAGGCTGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q08Y00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

67.683

91.111

0.617
  recA Pseudomonas stutzeri DSM 10701

64.897

94.167

0.611
  recA Acinetobacter baylyi ADP1

62.974

95.278

0.6
  recA Latilactobacillus sakei subsp. sakei 23K

61.96

96.389

0.597
  recA Acinetobacter baumannii D1279779

62.029

95.833

0.594
  recA Vibrio cholerae strain A1552

65.644

90.556

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

90.556

0.594
  recA Neisseria gonorrhoeae MS11

61.808

95.278

0.589
  recA Neisseria gonorrhoeae MS11

61.808

95.278

0.589
  recA Neisseria gonorrhoeae strain FA1090

61.808

95.278

0.589
  recA Helicobacter pylori strain NCTC11637

61.449

95.833

0.589
  recA Helicobacter pylori 26695

60.87

95.833

0.583
  recA Glaesserella parasuis strain SC1401

65.109

89.167

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.465

95.556

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

61.862

92.5

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

89.722

0.569
  recA Streptococcus pneumoniae D39

60.843

92.222

0.561
  recA Streptococcus pneumoniae R6

60.843

92.222

0.561
  recA Streptococcus pneumoniae TIGR4

60.843

92.222

0.561
  recA Streptococcus pneumoniae Rx1

60.843

92.222

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

92.222

0.553
  recA Streptococcus mitis SK321

59.639

92.222

0.55
  recA Streptococcus mitis NCTC 12261

59.639

92.222

0.55
  recA Streptococcus pyogenes NZ131

59.697

91.667

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.735

92.222

0.542
  recA Streptococcus mutans UA159

58.006

91.944

0.533

Multiple sequence alignment