Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F1729_RS23130 Genome accession   NZ_CP043931
Coordinates   6110773..6111861 (+) Length   362 a.a.
NCBI ID   WP_002649160.1    Uniprot ID   -
Organism   Gimesia maris strain DSM 8797     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6105773..6116861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1729_RS23115 (F1729_23005) - 6106749..6108011 (+) 1263 WP_002649157.1 DUF1573 domain-containing protein -
  F1729_RS23120 (F1729_23010) - 6108198..6109862 (+) 1665 WP_002649158.1 multiheme c-type cytochrome -
  F1729_RS29930 cyaB 6109921..6110487 (+) 567 WP_002649159.1 class IV adenylate cyclase -
  F1729_RS23130 (F1729_23020) recA 6110773..6111861 (+) 1089 WP_002649160.1 recombinase RecA Machinery gene
  F1729_RS23135 (F1729_23025) - 6112100..6113665 (+) 1566 WP_187782346.1 S1C family serine protease -
  F1729_RS23140 (F1729_23030) alaS 6113662..6116289 (+) 2628 WP_002649163.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38599.38 Da        Isoelectric Point: 6.7475

>NTDB_id=386624 F1729_RS23130 WP_002649160.1 6110773..6111861(+) (recA) [Gimesia maris strain DSM 8797]
MAAKARSKRATPAPSTNGTNDSEGMLKNALGQIEQAFGRGAIMKLTGANARSVPSIASGALSLDLALGGAGFPRGRIIEL
YGPESSGKTTLALHVIANAQKEGGIAAFIDAEHALDPVWAKKLGVNISELLVSQPTYGEEGLQIAEMLIKSNSVDVIVVD
SVAALVPKAELDGEIGDTHVGLQARMMSQAMRKLTGAISKSKTTVIFINQIREKIGVMFGSPETTPGGRALKFYSSVRVD
VRRIATLKDGDTVTGIRMKAKIVKNKIAPPFRIAEFDMLTTGGINYELDLLDLAVENKIVKKSGSWFSYGELRLGQGRDK
SKVVLEENPDICEEIKQKVLAAQGVVPTPEEESEPETEAVEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=386624 F1729_RS23130 WP_002649160.1 6110773..6111861(+) (recA) [Gimesia maris strain DSM 8797]
ATGGCCGCAAAAGCAAGATCAAAAAGAGCAACCCCTGCCCCGAGCACAAATGGCACGAATGATTCGGAAGGGATGCTGAA
AAACGCTCTGGGACAAATTGAACAGGCCTTTGGCAGAGGCGCGATTATGAAACTGACGGGCGCAAATGCCCGGTCTGTTC
CCTCAATTGCCAGTGGTGCACTTTCACTCGACCTGGCACTGGGAGGTGCCGGATTTCCGCGAGGTCGTATCATCGAACTT
TACGGGCCTGAATCGAGTGGTAAAACCACGCTCGCACTGCACGTGATTGCCAATGCTCAGAAAGAGGGAGGCATTGCCGC
GTTCATCGACGCCGAACACGCACTCGATCCGGTCTGGGCAAAAAAACTGGGGGTCAACATTTCCGAACTGCTCGTCAGTC
AGCCAACCTATGGCGAAGAAGGCCTGCAGATTGCCGAAATGCTGATCAAATCGAACTCGGTGGATGTCATCGTAGTCGAT
TCCGTCGCCGCCCTGGTTCCTAAAGCGGAACTGGACGGGGAAATCGGAGATACACACGTGGGCCTGCAGGCCCGCATGAT
GAGCCAGGCGATGCGAAAACTGACTGGCGCCATTTCCAAATCGAAAACAACAGTGATTTTCATTAACCAGATCCGTGAAA
AGATCGGCGTCATGTTCGGCAGCCCCGAAACGACCCCCGGCGGTCGCGCACTGAAATTCTATAGTTCGGTACGTGTGGAT
GTCCGCCGGATTGCCACGCTGAAAGACGGGGATACTGTGACCGGTATTCGCATGAAAGCCAAGATTGTCAAAAACAAAAT
CGCGCCCCCCTTCCGGATCGCGGAATTTGACATGCTCACAACAGGCGGAATTAATTACGAGCTGGATCTGCTGGACCTGG
CAGTCGAAAACAAAATCGTCAAGAAGAGTGGCAGCTGGTTCAGCTACGGCGAATTACGACTGGGACAAGGGCGTGACAAA
TCCAAAGTCGTGCTCGAAGAAAACCCGGATATCTGTGAGGAAATCAAACAGAAAGTTCTGGCGGCACAAGGAGTCGTCCC
CACTCCCGAAGAAGAGTCCGAACCGGAAACAGAGGCTGTCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(26-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

62.577

90.055

0.564
  recA Lactococcus lactis subsp. cremoris KW2

61.398

90.884

0.558
  recA Streptococcus pneumoniae Rx1

58.187

94.475

0.55
  recA Streptococcus pneumoniae TIGR4

58.187

94.475

0.55
  recA Streptococcus pneumoniae R6

58.187

94.475

0.55
  recA Streptococcus pneumoniae D39

58.187

94.475

0.55
  recA Streptococcus mitis SK321

56.686

95.028

0.539
  recA Streptococcus mitis NCTC 12261

56.851

94.751

0.539
  recA Latilactobacillus sakei subsp. sakei 23K

56.932

93.646

0.533
  recA Streptococcus mutans UA159

55.977

94.751

0.53
  recA Neisseria gonorrhoeae MS11

57.447

90.884

0.522
  recA Neisseria gonorrhoeae strain FA1090

57.447

90.884

0.522
  recA Neisseria gonorrhoeae MS11

57.447

90.884

0.522
  recA Pseudomonas stutzeri DSM 10701

59.494

87.293

0.519
  recA Acinetobacter baumannii D1279779

55.49

93.094

0.517
  recA Acinetobacter baylyi ADP1

54.839

94.199

0.517
  recA Streptococcus pyogenes NZ131

58.805

87.845

0.517
  recA Ralstonia pseudosolanacearum GMI1000

59.365

87.017

0.517
  recA Helicobacter pylori 26695

55.162

93.646

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.255

88.674

0.517
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.236

86.74

0.514
  recA Vibrio cholerae strain A1552

59.236

86.74

0.514
  recA Helicobacter pylori strain NCTC11637

54.867

93.646

0.514
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.193

91.436

0.514
  recA Glaesserella parasuis strain SC1401

57.325

86.74

0.497
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.289

87.845

0.494

Multiple sequence alignment