Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F2A31_RS06610 Genome accession   NZ_CP043909
Coordinates   1413237..1414280 (-) Length   347 a.a.
NCBI ID   WP_150025702.1    Uniprot ID   -
Organism   Acinetobacter suaedae strain C16S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1408237..1419280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS06580 (F2A31_06580) - 1408414..1408869 (+) 456 WP_150025698.1 phasin family protein -
  F2A31_RS06585 (F2A31_06585) - 1409039..1409311 (+) 273 WP_004639426.1 HU family DNA-binding protein -
  F2A31_RS06590 (F2A31_06590) - 1409451..1411322 (+) 1872 WP_150025699.1 SurA N-terminal domain-containing protein -
  F2A31_RS06595 (F2A31_06595) - 1411392..1412204 (-) 813 WP_150025700.1 YbgF trimerization domain-containing protein -
  F2A31_RS06605 (F2A31_06605) - 1412641..1413123 (-) 483 WP_150025701.1 regulatory protein RecX -
  F2A31_RS06610 (F2A31_06610) recA 1413237..1414280 (-) 1044 WP_150025702.1 recombinase RecA Machinery gene
  F2A31_RS06615 (F2A31_06615) - 1414452..1414880 (-) 429 WP_150025703.1 RNA-binding S4 domain-containing protein -
  F2A31_RS06620 (F2A31_06620) - 1414864..1415565 (-) 702 WP_150025704.1 HAD-IA family hydrolase -
  F2A31_RS06625 (F2A31_06625) - 1415577..1416434 (+) 858 WP_150025705.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  F2A31_RS06630 (F2A31_06630) - 1416488..1417222 (+) 735 WP_150025706.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37759.17 Da        Isoelectric Point: 4.9400

>NTDB_id=386475 F2A31_RS06610 WP_150025702.1 1413237..1414280(-) (recA) [Acinetobacter suaedae strain C16S1]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAQEIEK
LIREQLLTKNTNEAAPVEEEELDFLES

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=386475 F2A31_RS06610 WP_150025702.1 1413237..1414280(-) (recA) [Acinetobacter suaedae strain C16S1]
ATGGATGATAATAAAAGTAAAGCGTTACAAGCTGCTTTAAGCCAAATTGAAAAACAATTTGGTAAGAACACAGTGATGCG
CTTAGGTGATAATACCGTACAAGCAGTTGAAGCTGTATCAACGGGTTCTCTAACACTTGATATTGCGCTTGGTATTGGTG
GTTTACCCAAAGGGCGTATCATCGAAATCTATGGACCAGAATCTTCTGGTAAAACCACAATGACTTTGCAAGCCATTGCT
CAATGCCAAAAAACTGGTGGTACCTGTGCATTTATCGATGCAGAACATGCCTTAGACCCTGAATATGCACGCAAATTAGG
CGTAGATATTGACAACTTGTTGGTTTCACAACCTGACAACGGTGAACAAGCATTAGAGATTGCAGACATGCTGGTTCGTT
CTGGCGCAATTGATCTTATCGTTGTCGACTCCGTTGCAGCCCTCACCCCTAAAGCGGAAATTGAAGGCGAAATGGGTGAT
TCACATATGGGCTTACAAGCACGTTTGATGAGTCAGGCATTGCGTAAAATCACTGGTAATGCGAAGCGCTCAAACTGTAT
GGTAATCTTCATTAACCAAATCCGTATGAAGATTGGCGTGATGTTTGGTAGCCCAGAAACAACAACTGGTGGTAATGCAC
TTAAATTCTATGCATCTGTCCGCTTAGACATCCGTCGTATCGGTGCAGTGAAAGAAGGTGATGAAATCACCGGTAATGAA
ACTCGCGTTAAAGTTGTTAAAAATAAAATGGCACCGCCGTTCAAAGAAGCAGTGTTCCAGATCATGTATGGGAAAGGTAC
AAATCAACTAGGTGAACTGGTTGATCTCGCAGTCCAACAAGATATTGTTCAAAAAGCAGGTGCTTGGTACTCTTATCAGG
GCAACAAAATTGGTCAAGGTAAGAATAACGTCATCCGTCATTTTGAAGAAAACCCACAAATGGCACAAGAAATTGAAAAG
CTCATTCGTGAACAACTTCTAACAAAGAACACCAATGAAGCCGCTCCAGTAGAAGAAGAAGAGCTCGACTTCTTAGAAAG
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

93.064

99.712

0.928
  recA Acinetobacter baylyi ADP1

90.831

100

0.914
  recA Pseudomonas stutzeri DSM 10701

73.547

99.135

0.729
  recA Vibrio cholerae strain A1552

74.312

94.236

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.236

0.7
  recA Glaesserella parasuis strain SC1401

67.435

100

0.674
  recA Ralstonia pseudosolanacearum GMI1000

66.193

100

0.671
  recA Neisseria gonorrhoeae MS11

68.827

93.372

0.643
  recA Neisseria gonorrhoeae MS11

68.827

93.372

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.372

0.643
  recA Helicobacter pylori strain NCTC11637

62.248

100

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

96.254

0.617
  recA Helicobacter pylori 26695

61.671

100

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Streptococcus mitis SK321

58.79

100

0.588
  recA Streptococcus mutans UA159

58.621

100

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.444

90.778

0.585
  recA Streptococcus mitis NCTC 12261

59.238

98.271

0.582
  recA Streptococcus pyogenes NZ131

61.846

93.66

0.579
  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579
  recA Streptococcus pneumoniae D39

61.656

93.948

0.579
  recA Streptococcus pneumoniae R6

61.656

93.948

0.579
  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

92.795

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

57.353

97.983

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.084

0.553

Multiple sequence alignment