Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ENTCL_RS05125 Genome accession   NC_014618
Coordinates   1075207..1076265 (+) Length   352 a.a.
NCBI ID   WP_013365052.1    Uniprot ID   A0A806X6Z4
Organism   [Enterobacter] lignolyticus SCF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1070207..1081265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENTCL_RS05095 (Entcl_1022) srlD 1070412..1071191 (-) 780 WP_013365046.1 sorbitol-6-phosphate dehydrogenase -
  ENTCL_RS05100 (Entcl_1023) srlB 1071209..1071571 (-) 363 WP_013365047.1 PTS glucitol/sorbitol transporter subunit IIA -
  ENTCL_RS05105 (Entcl_1024) srlE 1071583..1072545 (-) 963 WP_013365048.1 PTS glucitol/sorbitol transporter subunit IIB -
  ENTCL_RS05110 (Entcl_1025) srlA 1072542..1073105 (-) 564 WP_013365049.1 PTS glucitol/sorbitol transporter subunit IIC -
  ENTCL_RS05115 (Entcl_1026) mltB 1073382..1074458 (+) 1077 WP_013365050.1 lytic murein transglycosylase B -
  ENTCL_RS05120 (Entcl_1027) pncC 1074636..1075133 (+) 498 WP_013365051.1 nicotinamide-nucleotide amidase -
  ENTCL_RS05125 (Entcl_1028) recA 1075207..1076265 (+) 1059 WP_013365052.1 recombinase RecA Machinery gene
  ENTCL_RS05130 (Entcl_1029) recX 1076342..1076845 (+) 504 WP_013365053.1 recombination regulator RecX -
  ENTCL_RS05135 (Entcl_1030) alaS 1077034..1079661 (+) 2628 WP_013365054.1 alanine--tRNA ligase -
  ENTCL_RS05140 (Entcl_1031) csrA 1079902..1080087 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37849.32 Da        Isoelectric Point: 4.8055

>NTDB_id=38643 ENTCL_RS05125 WP_013365052.1 1075207..1076265(+) (recA) [[Enterobacter] lignolyticus SCF1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANAIAWLKENPAAAKEI
EKKVRELLLNNQDPTPAFTVDDNDVAETSEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=38643 ENTCL_RS05125 WP_013365052.1 1075207..1076265(+) (recA) [[Enterobacter] lignolyticus SCF1]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAACAATTCGGTAAAGGCTCTAT
CATGCGCCTGGGTGAAGACCGCTCCATGGATGTGGAAACTATCTCCACCGGCTCGCTTTCGCTGGATATCGCCCTGGGTG
CCGGCGGTTTACCGATGGGCCGTATTGTTGAAATTTACGGGCCGGAGTCTTCCGGTAAAACCACGCTGACCCTGCAGGTG
ATCGCGGCAGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAACACGCGCTGGACCCGATTTATGCCCGCAA
GCTGGGTGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGTTCCGGCGCGGTCGACGTTATCGTCGTCGACTCCGTCGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGTCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTTGGCAACCCGGAAACCACCACCGGGGGTA
ACGCGCTCAAATTCTACGCCTCCGTGCGCCTGGACATTCGTCGTATCGGCGCGGTGAAAGAGGGTGAAAACGTCGTCGGC
AGCGAAACCCGCGTGAAGGTCGTGAAAAACAAAATCGCGGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGGATTAACTTCTTCGGCGAACTGGTCGATCTCGGCGTGAAAGAGAAGCTGATCGAAAAAGCGGGCGCCTGGTATAGCT
ATAACGGTGAAAAAATCGGGCAGGGTAAAGCTAACGCGATTGCCTGGCTGAAGGAAAACCCGGCCGCCGCAAAAGAGATC
GAAAAGAAAGTTCGCGAACTGCTGCTCAACAACCAGGATCCTACTCCGGCGTTCACCGTTGACGATAACGACGTCGCGGA
AACCAGCGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A806X6Z4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.226

100

0.807
  recA Vibrio cholerae strain A1552

80.226

100

0.807
  recA Acinetobacter baylyi ADP1

71.633

99.148

0.71
  recA Pseudomonas stutzeri DSM 10701

73.021

96.875

0.707
  recA Acinetobacter baumannii D1279779

74.924

92.898

0.696
  recA Glaesserella parasuis strain SC1401

68.661

99.716

0.685
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Helicobacter pylori strain NCTC11637

62.018

95.739

0.594
  recA Helicobacter pylori 26695

61.721

95.739

0.591
  recA Streptococcus pneumoniae D39

63.158

91.761

0.58
  recA Streptococcus pneumoniae TIGR4

63.158

91.761

0.58
  recA Streptococcus pneumoniae R6

63.158

91.761

0.58
  recA Streptococcus pneumoniae Rx1

63.158

91.761

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

92.045

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus mitis SK321

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.761

0.571
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.33

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56

Multiple sequence alignment