Detailed information NTG0386404

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: FJD32_RS06060
• Genome accession: NZ_CP043902
• Coordinates: 1366264..1367337 (+)
• Length: 357 a.a.
• NCBI ID: WP_037420979.1
• Uniprot ID: A0A501XXR1
• Organism: Shewanella sp. LC6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1361264..1372337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJD32_RS06045 (FJD32_006145)	-	1361269..1362165 (+)	897	WP_140906927.1	peptidoglycan DD-metalloendopeptidase family protein	-
FJD32_RS06050 (FJD32_006150)	rpoS	1362247..1363227 (+)	981	WP_037421178.1	RNA polymerase sigma factor RpoS	-
FJD32_RS06055 (FJD32_006155)	mutS	1363311..1365881 (-)	2571	WP_037426206.1	DNA mismatch repair protein MutS	-
FJD32_RS06060 (FJD32_006160)	recA	1366264..1367337 (+)	1074	WP_037420979.1	recombinase RecA	Machinery gene
FJD32_RS06065 (FJD32_006165)	-	1367412..1367822 (+)	411	WP_055648572.1	regulatory protein RecX	-
FJD32_RS06070 (FJD32_006175)	alaS	1368377..1371001 (+)	2625	WP_055648571.1	alanine--tRNA ligase	-
FJD32_RS06075 (FJD32_006180)	-	1371011..1372267 (+)	1257	WP_037420970.1	aspartate kinase	-

Sequence

Protein

• Length: 357 a.a.
• Molecular weight: 38086.53 Da
• Isoelectric Point: 4.8722

>NTDB_id=386404 FJD32_RS06060 WP_037420979.1 1366264..1367337(+) (recA) [Shewanella sp. LC6]
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSALASSASDDDNIEGNIDLETGEVF

Nucleotide

• Length: 1074 bp

>NTDB_id=386404 FJD32_RS06060 WP_037420979.1 1366264..1367337(+) (recA) [Shewanella sp. LC6]
ATGAAGGTCGATCCAAACAAAGAGAAAGCACTTGCTGCGGTATTGAGCCAAATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGACCGCTCTATGGATGTCGAGACCATTTCTACTGGCTCACTTTCCCTTGACGTCGCCTTAGGGG
CTGGCGGTTTACCAATGGGCCGTATTGTTGAGATTTATGGTCCTGAATCATCAGGTAAGACAACCCTGACATTAGAAGTG
ATTGCCGCTGCTCAGCGCGAAGGTAAAACCTGTGCCTTTATCGATGCTGAGCACGCTCTCGATCCTATCTACGCGAAAAA
GTTAGGCGTAGATATTGATAACTTATTGTGTTCACAACCCGATACCGGTGAACAAGCTCTTGAGATCTGTGATGCGTTAA
CCCGTTCTGGCGCGGTAGATGTGATCATCGTTGACTCGGTCGCGGCATTAACACCCAAGGCAGAAATTGAGGGCGAAATC
GGTGACTCACATATGGGCTTAGCAGCGCGTATGATGAGCCAAGCGATGCGTAAGTTAGCGGGTAACCTCAAGCAATCGAA
TACACTGTTAATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACGGGTGGTA
ATGCTCTGAAATTCTATGCTTCTGTTCGTTTAGATATTCGCCGTACTGGTGCTATCAAAGAAGGCGACGAAGTGGTTGGT
AACGAGACTCGTGTCAAAGTCGTTAAAAACAAAGTGGCTGCACCATTTAAGCAAGCTGAGTTTCAAATCCTTTACGGTCA
AGGTATCAACCGTACTGGCGAGTTAGTCGATTTAGGGGTAGCCCATAAACTGATTGAGAAAGCTGGTGCTTGGTATAGCT
ACAAGGGCGATAAAATTGGTCAAGGCCGTGCCAATGCGGGTAAATATTTGACTGAAAACCCAGCCATTGCCGCTGAAATC
GATAAGACATTGCGTGAGTTATTATTGAGTAACCCAAGTGCACTGGCATCATCAGCATCCGATGATGATAATATCGAGGG
GAATATTGATTTAGAAACAGGCGAAGTATTCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

3D structure

• AlphaFold DB: A0A501XXR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	82.899	96.639	0.801
recA	Vibrio cholerae O1 biovar El Tor strain E7946	82.899	96.639	0.801
recA	Pseudomonas stutzeri DSM 10701	73.021	95.518	0.697
recA	Glaesserella parasuis strain SC1401	68.571	98.039	0.672
recA	Acinetobacter baumannii D1279779	70.088	95.518	0.669
recA	Acinetobacter baylyi ADP1	71.903	92.717	0.667
recA	Neisseria gonorrhoeae MS11	69.35	90.476	0.627
recA	Neisseria gonorrhoeae MS11	69.35	90.476	0.627
recA	Neisseria gonorrhoeae strain FA1090	69.35	90.476	0.627
recA	Ralstonia pseudosolanacearum GMI1000	70.794	88.235	0.625
recA	Streptococcus mitis SK321	58.678	100	0.597
recA	Streptococcus mitis NCTC 12261	58.678	100	0.597
recA	Streptococcus pneumoniae TIGR4	63.415	91.877	0.583
recA	Streptococcus pneumoniae Rx1	63.415	91.877	0.583
recA	Streptococcus pneumoniae D39	63.415	91.877	0.583
recA	Streptococcus pneumoniae R6	63.415	91.877	0.583
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.42	96.639	0.574
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.961	93.277	0.569
recA	Streptococcus pyogenes NZ131	61.585	91.877	0.566
recA	Streptococcus mutans UA159	61.28	91.877	0.563
recA	Helicobacter pylori strain NCTC11637	60.241	92.997	0.56
recA	Bacillus subtilis subsp. subtilis str. 168	62.305	89.916	0.56
recA	Helicobacter pylori 26695	59.94	92.997	0.557
recA	Lactococcus lactis subsp. cremoris KW2	60.061	91.877	0.552
recA	Latilactobacillus sakei subsp. sakei 23K	61.442	89.356	0.549
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.27	88.235	0.541