Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACIB15232_RS00380 Genome accession   NZ_CP043857
Coordinates   73869..74918 (+) Length   349 a.a.
NCBI ID   WP_024775841.1    Uniprot ID   A0A5J6RE47
Organism   Aliarcobacter cibarius strain H743     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68869..79918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIB15232_RS00355 (ACIB15232_0071) neuB 69569..70567 (-) 999 WP_151028777.1 N-acetylneuraminate synthase -
  ACIB15232_RS00360 (ACIB15232_0072) - 70564..71139 (-) 576 WP_151028778.1 acetyltransferase -
  ACIB15232_RS00365 (ACIB15232_0073) - 71139..72275 (-) 1137 WP_151028779.1 LegC family aminotransferase -
  ACIB15232_RS00370 (ACIB15232_0074) - 72277..73467 (-) 1191 WP_151028780.1 UDP-N-acetylglucosamine 4,6-dehydratase -
  ACIB15232_RS00375 (ACIB15232_0075) - 73572..73781 (+) 210 WP_024775842.1 hypothetical protein -
  ACIB15232_RS00380 (ACIB15232_0076) recA 73869..74918 (+) 1050 WP_024775841.1 recombinase RecA Machinery gene
  ACIB15232_RS00385 (ACIB15232_0077) eno 75089..76366 (+) 1278 WP_024775840.1 phosphopyruvate hydratase -
  ACIB15232_RS00390 (ACIB15232_0078) - 76399..76608 (+) 210 WP_228130318.1 septum formation initiator -
  ACIB15232_RS00395 (ACIB15232_0079) - 76605..77303 (+) 699 WP_138108160.1 AMIN domain-containing protein -
  ACIB15232_RS00400 (ACIB15232_0080) - 77325..78173 (-) 849 WP_138108161.1 biotin synthase -
  ACIB15232_RS00405 (ACIB15232_0081) - 78163..78675 (-) 513 WP_138108162.1 metallophosphoesterase family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37364.79 Da        Isoelectric Point: 4.7863

>NTDB_id=386288 ACIB15232_RS00380 WP_024775841.1 73869..74918(+) (recA) [Aliarcobacter cibarius strain H743]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEVISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIIDKAGAWFSYGDTKIGQGRENSKLFLRDNPAIAKEIE
DKILNSMGINDAIITGGSDDADDISGLDD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=386288 ACIB15232_RS00380 WP_024775841.1 73869..74918(+) (recA) [Aliarcobacter cibarius strain H743]
ATGGATGAAAATCAAAAAAAATCACTTGAACTTGCAATAAAACAAATAGATAAAGCTTTTGGAAAAGGTACATTGATAAG
ACTTGGGGATAAGGAAGTAATCCCAACTGAAGTAATAAGTACTGGCTCTTTAGGACTTGATTTGGCTCTTGGTGTTGGTG
GATTACCAAAAGGAAGAGTTATTGAAATATATGGACCGGAAAGTTCAGGGAAAACAACTTTAACTTTACATGCTATTGCT
GAAGCTCAAAAAGCTGGTGGAGTTTGTGCATTTATTGATGCAGAACATGCACTGGATGTAAAATATGCGAAAGACATAGG
AGTTGATACAGATAATTTACTTGTTTCTCAACCAGATTTTGGAGAACAAGCTTTAGAGATTCTTGAAACAGTTATTAGAA
GTGGAGCTGTTGATTTAGTAGTTGTGGATTCTGTTGCAGCACTAACTCCAAAAGTTGAAATAGATGGGGATATGGATGAC
CAACAAGTTGGAGTTCAAGCAAGACTTATGAGTAAAGCATTACGAAAAGTAACAGGTCTTTTAAGTAAAATGAACTGTAC
AGTAATTTTCATTAATCAAATAAGAATGAAAATAGGTATGACTGGATATGGAAGCCCAGAAACAACAACAGGTGGAAATG
CTCTTAAATTCTATTCTTCAGTTAGACTTGATATTAGAAGAATCGCAACACTTAAACAAGGTGAAAATTCTATAGGGAAT
AGAGTAAAAGTAAAAGTAGTAAAAAATAAAGTTGCTGCTCCATTTAAACAAGCTGAGTTTGATATTATGTTTGGAGAGGG
TATTTCAAAAACTGGAGAACTTGTTGATTATGGTGTTAAACTTGATATTATTGATAAAGCAGGTGCTTGGTTTAGTTATG
GTGATACTAAAATAGGACAAGGTAGAGAAAATTCAAAACTATTTTTAAGAGATAATCCAGCAATTGCTAAAGAGATAGAG
GATAAAATTTTAAATTCTATGGGAATAAATGATGCAATTATTACAGGTGGAAGTGATGATGCTGATGATATTTCTGGACT
GGATGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6RE47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.176

97.421

0.742
  recA Helicobacter pylori 26695

75.749

95.702

0.725
  recA Helicobacter pylori strain NCTC11637

75.749

95.702

0.725
  recA Acinetobacter baumannii D1279779

64.286

96.275

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

94.269

0.616
  recA Acinetobacter baylyi ADP1

62.099

98.281

0.61
  recA Neisseria gonorrhoeae MS11

62.099

98.281

0.61
  recA Neisseria gonorrhoeae strain FA1090

62.099

98.281

0.61
  recA Neisseria gonorrhoeae MS11

62.099

98.281

0.61
  recA Vibrio cholerae strain A1552

60.519

99.427

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.519

99.427

0.602
  recA Pseudomonas stutzeri DSM 10701

59.429

100

0.596
  recA Glaesserella parasuis strain SC1401

59.483

99.713

0.593
  recA Ralstonia pseudosolanacearum GMI1000

64.127

90.258

0.579
  recA Streptococcus pyogenes NZ131

59.091

94.556

0.559
  recA Streptococcus mitis NCTC 12261

58.735

95.129

0.559
  recA Streptococcus pneumoniae TIGR4

58.434

95.129

0.556
  recA Streptococcus pneumoniae D39

58.434

95.129

0.556
  recA Streptococcus pneumoniae R6

58.434

95.129

0.556
  recA Streptococcus mitis SK321

58.434

95.129

0.556
  recA Streptococcus pneumoniae Rx1

58.434

95.129

0.556
  recA Streptococcus mutans UA159

58.61

94.842

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

59.146

93.983

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

58.182

94.556

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.269

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

93.41

0.544

Multiple sequence alignment